ChIP-seq peak-calling, QC and differential analysis pipeline.

Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

An automated ChIP-seq pipeline using Nextfow

Preprocessing workflow for ATAC-seq and ChIP-seq data

Chip-Seq pipeline

chipcallvar is a reproducible Nextflow workflow to call germline/somatic variants (SNVs and INDELs) on ChIP-seq data primarily taking advantage of macs3 callvar, GATK mutect2 and freebayes variant callers.

Analysis of .fastq ChIP-seq datasets

A simple nextflow pipeline for calling peaks and producing tracks from ChIP-seq data

A Nextflow pipeline for ChIP-seq differential binding/occupancy analysis.

CHromAtin iMmuno PrecipitAtion sequencinG aNalysis pipEline