SISTR (Salmonella In Silico Typing Resource) command-line tool
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Apr 24, 2025 - Python
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cgmlst
Here are 5 public repositories matching this topic...
mlst2dist.py computes a distance matrix from a chewBBACA MLST alleles table, using Hamming Distance modified with correction for missing data
genomics mlst distance-calculation hamming-distance cgmlst distance-matrix wgmlst dissimilarity-matrix chewbbaca
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Apr 19, 2022 - Python
The python multithreaded version of the famous cgmlst-dists bioinformatic tool by Torsten Seemann
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Mar 17, 2025 - Python
Proof of concept implementation for indexed similarity search of a cgMLST profile against a database.
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Nov 27, 2024 - Python
Repository for the pneumococcal cgMLST typing scheme (pneumococcal genome library)
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Jun 5, 2025 - Python
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