Deep Learning Library for Single Cell Analysis
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Aug 30, 2024 - Python
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cell-biology
Here are 43 public repositories matching this topic...
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
deep-learning pytorch stitching segmentation datasets image-segmentation multiplex super-resolution immunohistochemical-images cell-segmentation digital-pathology pathology whole-slide-imaging cell-biology cloud-native-applications multitask-learning pathology-image pathology-gan immunohistochemistry ai-ready
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Feb 12, 2025 - Python
(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"
pytorch biomedical multi-resolution cell-segmentation instance-segmentation cell-biology pytorch-implementation multi-modality pytorch-segmentation monai vision-transformer neurips-2022 miscroscopy
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Apr 1, 2024 - Python
Integrated Cell project implemented in pytorch
python machine-learning pytorch generative-adversarial-network neural-networks autoencoder science-research cell-analysis cell-biology
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Jul 6, 2023 - Python
Cell cycle inference in single-cell RNA-seq
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Apr 25, 2023 - Python
Automated Cell Toolkit
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Dec 15, 2020 - Python
3D shape analysis using deep learning
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Oct 19, 2023 - Python
Explainable AI model of cell behavior
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Apr 4, 2023 - Python
genomics, biochemistry, biotechnology, cell biology, biophysics, ecology
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May 18, 2023 - Python
Track single cells and profile the cell cycle with PCNA fluorescence images
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Sep 1, 2023 - Python
Rule-based modeling for whole-cell models.
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May 20, 2022 - Python
A general Python framework for using hidden Markov models on binary trees or cell lineage trees.
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Apr 12, 2024 - Python
Language for describing whole-cell models as reaction networks
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May 24, 2021 - Python
A Python package for analyzing XYZ positional data of moving objects over time
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Mar 6, 2025 - Python
Quantifying 2D cell shape and epithelial tissue dynamics
python image-segmentation image-projections cell-segmentation cell-biology cell-shape epithelial-tissue
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Jan 27, 2025 - Python
Framework for systematically and scalably designing whole-cell models from large datasets
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Jan 20, 2025 - Python
Deep Learning Based Cell Segmentation
deep-learning biology images pypi annotations image-processing python3 dataset segmentation convolutional-neural-networks image-segmentation keras-tensorflow cell-biology image-segmentation-tensorflow unet-tensorflow
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Jul 30, 2022 - Python
A simple plugin to detect vesicles in cells images.
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Jul 26, 2022 - Python
Tools for building databases of experimental data for constructing whole-cell models
bioinformatics genomics systems-biology data-integration molecular-biology data-aggregation cell-biology whole-cell-modeling
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Jul 8, 2021 - Python
Fluospotter is an end-to-end pipeline designed for nuclei segmentation and puncta detection in fluorescence microscopy images.
deep-learning segmentation cell-segmentation cell-biology u-net 3d-volume microscopy-images diffraction-limited-spots spot-detection
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Oct 2, 2024 - Python
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