Integrated Cell project implemented in pytorch
Shape-Out has been superseded by Shape-Out 2.
manipulation and analysis of phase microscopy data
High Intensity Peak Analysis for detecting High Intensity Cells
A small tool in python to read the bright-field image data and the phase image data recovered from a Digital holographic microscope (DHM) and segment the nuclei to calculate physical parameters like roughness and volume.
Deep Learning based segmentation and tracking to understand the dynamics and morphology of cells over time.
A script to plot traces of muscle contractions from video recordings. This is part of my ongoing PhD work.
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