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Bioinformatics

Bioinformatics is an interdisciplinary field that intersects with biology, computer science, mathematics and statistics. It concerns itself with the development and use of methods and software tools for collecting and analyzing biological data.

Here are 518 public repositories matching this topic...

FelixKrueger / Bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

bioinformatics dna methylation

Updated Jan 6, 2025
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openbiox / weekly

生信爱好者周刊（每周日发布）

bioinformatics weekly free-journals

Updated Mar 30, 2025
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linsalrob / ComputationalGenomicsManual

Robs manual for the computational genomics and bioinformatics class.

bioinformatics genomics online-class

Updated Nov 12, 2024
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biowasm / biowasm

WebAssembly modules for genomics

javascript bioinformatics genomics webassembly awk jq sed grep bedtools samtools bowtie2 minimap2 seqtk

Updated Feb 12, 2025
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Benjamin-Lee / deep-rules

Ten Quick Tips for Deep Learning in Biology

data-science machine-learning bioinformatics deep-learning genomics biology computational-biology manuscript manubot

Updated Nov 30, 2021
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mikelove / bioc-refcard

Bioconductor cheat sheet

bioinformatics r howto guide cheatsheet bioconductor rnaseq compbio microarray

Updated Aug 26, 2024
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XSLiuLab / Workshop

课题组每周研讨会

data-science bioinformatics r workshop

Updated Apr 17, 2024
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ISUgenomics / bioinformatics-workbook

Bioinformatics Workbook repository

bioinformatics

Updated Mar 30, 2025
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MannLabs / alphapept

A modular, python-based framework for mass spectrometry. Powered by nbdev.

bioinformatics proteomics mass-spectrometry alphapept-ecosystem

Updated Apr 19, 2024
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openSNP / snpr

The sources of the openSNP website

rails bioinformatics open-science opensnp

Updated Mar 31, 2025
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shinyCircos

YaoLab-Bioinfo / shinyCircos

an R/shiny application for creation of Circos plot interactively

bioinformatics r shiny shiny-server circos circos-graphs

Updated Sep 25, 2022
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B-UMMI / chewBBACA

BSR-Based Allele Calling Algorithm

bioinformatics genomics mlst bacteria cgmlst outbreak-detection wgmlst bacterial-genome-analysis allele-calling bacterial-typing

Updated Mar 11, 2025
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MaayanLab / biojupies

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

cloud bioinformatics rna-seq jupyter pipeline notebook systems-biology dcppc

Updated Nov 12, 2024
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Nesvilab / MSFragger

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

bioinformatics proteomics mass-spectrometry database-search

Updated Jun 20, 2024
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rajewsky-lab / openst

Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab

bioinformatics omics transcriptomics spatial-transcriptomics

Updated Nov 21, 2024
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jminnier / STARTapp

The START App: R Shiny Transcriptome Analysis Resource Tool

visualization bioinformatics rna-seq r shiny transcriptome shiny-apps genome-biology

Updated Nov 11, 2020
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JEFworks-Lab / STalign

Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping

bioinformatics alignment diffeomorphism singlecell spatialtranscriptomics

Updated Dec 11, 2023
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alexcritschristoph / Qiime16sTutorial

A tutorial on methods of 16S analysis with QIIME 1

bioinformatics

Updated Jul 26, 2019
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genome / bfx-workshop

A course on genomics and bioinformatics from WU

bioinformatics dataviz genomics analysis biology sequencing dna alignment rnaseq rna single-cell atacseq scrna chipseq

Updated Mar 24, 2025
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bobeobibo / phigaro

Phigaro is a scalable command-line tool for predicting phages and prophages

bioinformatics genomics bioinformatics-pipeline biological-data-analysis bioinformatics-analysis genomic-data-analysis phage genomic-regions bioinformatics-tool phages prophage

Updated Jan 8, 2024
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Related Topics

genomics sequencing