Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
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Dec 18, 2025 - Python
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bioimaging
Here are 16 public repositories matching this topic...
Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
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Jan 8, 2026 - Python
BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster
python slurm high-performance-computing fair image-analysis omero bioimaging high-throughput-screening high-content-screening cytomine biomero biaflows
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Jan 7, 2026 - Python
An introduction to OME-Zarr for big bioimaging data
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Jan 5, 2026 - Python
Package providing bioimaging functionality using TileDB. Source of the tiledb-bioimg Python package.
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Dec 17, 2025 - Python
A web-based resource for the scientific visualization community to enhance reproducibility and facilitate testing and development of OME-Zarr tools.
visualization https s3 scientific-visualization bioimaging scivis ome-zarr ome-ngff aws-open-dataset
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Nov 14, 2025 - Python
TileDB BioImaging plugin for Napari
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Feb 4, 2025 - Python
Scripts for use with BIOMERO
slurm high-performance-computing fair image-analysis omero bioimaging high-throughput-screening high-content-screening cytomine biomero biaflows
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Jan 7, 2026 - Python
A Python3 Radial Image Analysis Toolkit
image-processing image-segmentation image-analysis microscopy hacktoberfest bioimaging format-conversion-tool
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Feb 4, 2022 - Python
Analysis software for hyperspectral scans and spectra acquired in mid-IR photo-induced force microscopy
analysis pca-analysis imaging hyperspectral pifm bioimaging infrared-spectra surface-chemistry pif-ir nanochemical
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Jan 8, 2026 - Python
Crop and rotate your embryo microscopy images!
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Mar 11, 2025 - Python
Python code that I used in my blog posts on the Zarr file format.
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Oct 24, 2022 - Python
Graduation Project
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Jan 17, 2021 - Python
Python library for extracting 260+ morphological features from cell segmentation masks in microscopy time-series. Includes static shape metrics, dynamic features, boundary curvature analysis, protrusion detection, and Fourier descriptors.
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Jan 4, 2026 - Python
ISCC Processing for Multi-Dimensional Bioimage Data
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Oct 6, 2025 - Python
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