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bedgraph

Here are 4 public repositories matching this topic...

TheJacksonLaboratory / pyBedGraph

A Python package for fast operations on 1-dimensional genomic signal tracks

bioinformatics chip-seq atac-seq bedgraph bedgraph-files

Updated Apr 3, 2020
Python

sajadamouei / chip-seq-analayzer

These scripts examine and display visual representations of .bedGraph and .bed files associated with CHIP-seq datasets.

coverage histogram chip-seq bed boxplot bedgraph data-distribution

Updated May 23, 2023
Python

ronin-gw / mappability-track-pipeline

Generate mappability tracks as BigWig file from genome fasta with GEM

bioinformatics bioinformatics-pipeline bigwig wig bedgraph mappability alignability

Updated Oct 24, 2017
Python

dpuiu / samplecov

Computes per-sample coverage from multiple BAM, CRAM, or bedGraph files, ensuring each genomic position is counted only once per sample. Chromosomes are processed in parallel to maximize throughput, producing a single tabix-indexed bedGraph.gz file.

coverage bam cram bedgraph

Updated Oct 13, 2025
Python

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