Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
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Updated
Oct 17, 2024 - Parrot
Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR products
Extract alleles from genome assemblies
Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.
A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models
A tool for downloading HLA alleles, epitopes and frequencies
Script for interactive download schemas and definitions for any bigsdb installation using its api. Useful for downloading wg/cgMLST genes and alleles.
Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.
R package to find samples that represent all variables
An application that handles and manipulates functions and variables related to the type of blood system: ABO System.
A command-line parser for VCF files designed for population genetics analyses.
GAT (Generic Genome-Wide Association Tool)
This is simple project to simulate Alleles
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