Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.
# Staphscope Typing Tool A unified MLST + spa + SCCmec typing tool for *Staphylococcus aureus*. ## Features - Multi-locus sequence typing (MLST) - spa typing - SCCmec typing using CGE SCCmecFinder - Parallel processing for high-throughput analysis - Comprehensive reporting in multiple formats
QUT Capstone Project featuring a vanilla javascript project designed to display genome information from a PostgreSQL database in a user friendly way. Allows genomes to be tagged in groups and generates simple aggregate statistics.
SCAPE - StaphyloCoccus Aureus Pangenome Exploration
Application of Machine Learning with MALDI-TOF MS for Rapid Differentiation between Methicillin-susceptible and Methicillin-resistant Staphylococcus aureus
Raw data and code for the Genomic Analysis of Singles and Pools (GASP) project - https://doi.org/10.1099/mgen.0.001111
This repository introduces the codes applied to the nasal microbial community of the latest available curated GEMs of D. pigrum and S. aureus.
A bioinformatics pipeline for RNA-Seq analysis of Staphylococcus aureus persisters under antibiotic stress, based on Peyrusson et al. (2020). Built with Nextflow and Docker for reproducibility.
Curve Growth modeling-IPASS project
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