alignment-free

Fast and accurate tool for estimating genomic distances between genome-skims

Alignment-Free RGBT Salient Object Detection: Semantics-guided Asymmetric Correlation Network and A Unified Benchmark

Alignment-Free RGB-T Salient Object Detection: A Large-scale Dataset and Progressive Correlation Network

Deep learning based alignment-free method for protein family modeling and prediction

Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences

Extract SNPs and accessory differences in closely related bacterial genomes from k-mers

A neural network for Alignment-free identification of eDNA

An ensemble method for predicting transcription factor in protein sequences

Alignment-free bacterial identification and classification in metagenomics sequencing data using machine learning

Scorpio: Advancing Embeddings for Superior Biological Sequence Analysis

An alignment-free deep-learning model trained to classify human gut bacteria

MSc Data Science Dissertation Project, An Alignment Tool which compares DNA sequences using k-mer profiling and UPGMA Clustering to generate Phylogenetic Dendrogram Trees to trace evolutionary relations and perform phylogenetic analysis.

Alignment-free gene prioritization using the moment of inertia tensor (Proteins 2022, doi:10.1002/prot.26226)

Annotation-free detection of viral gene-end transcription signals from homopolymer run-length statistics.

[Features extraction method] You can find the new version of CASTOR_KRFE at https://github.com/bioinfoUQAM/CASTOR_KRFE