A high-quality tool for convert PDF to Markdown and JSON.一站式开源高质量数据提取工具，将PDF转换成Markdown和JSON格式。

Graphormer is a general-purpose deep learning backbone for molecular modeling.

A trainable PyTorch reproduction of AlphaFold 3.

A Python toolkit for fine-tuning Geospatial Foundation Models (GFMs).

PaddleScience is SDK and library for developing AI-driven scientific computing applications based on PaddlePaddle.

The resources of LucaOne, including: the model code, training scripts, embedding inference code, and trained checkpoints.

GraphGen: Enhancing Supervised Fine-Tuning for LLMs with Knowledge-Driven Synthetic Data Generation

Code and datasets for paper "K2: A Foundation Language Model for Geoscience Knowledge Understanding and Utilization" in WSDM-2024

A language agent gym with challenging scientific tasks

[ICLR 2025 Oral] This is the official repo for the paper "LLM-SR" on Scientific Equation Discovery and Symbolic Regression with Large Language Models

Geom3D: Geometric Modeling on 3D Structures, NeurIPS 2023

A general AI agent framework that can be adapted to various tasks and environments.

Official code repo for the paper "LlaSMol: Advancing Large Language Models for Chemistry with a Large-Scale, Comprehensive, High-Quality Instruction Tuning Dataset"

[ICLR'25] ScienceAgentBench: Toward Rigorous Assessment of Language Agents for Data-Driven Scientific Discovery

A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)

[ICML 2025] 🧬 ReQFlow: Rectified Quaternion Flow for Efficient and High-Quality Protein Backbone Generation

[NeurIPS 2023] This is the official code for the paper "TPSR: Transformer-based Planning for Symbolic Regression"

The official code for "TaxDiff: Taxonomic-Guided Diffusion Model for Protein Sequence Generation"

MolDiff: Addressing the Atom-Bond Inconsistency Problem in 3D Molecule Diffusion Generation

[ICLR 2022] The implementation for the paper "Equivariant Graph Mechanics Networks with Constraints".