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uBlock Origin - An efficient blocker for Chromium and Firefox. Fast and lean.
An R package for learning log-ratio biomarkers from high-throughput sequencing data.
Fast, efficient RNA-Seq metrics for quality control and process optimization
Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
Metapresence is a Python tool to calculate metrics to assess the evenness of the coverage distribution on DNA sequences, in order to infer their presence in a given sample.
😎 A curated list of awesome GitHub Profile which updates in real time
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. …
Working with the outputs of sourmash in R
In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
CARE: Context-Aware Read Error correction for Illumina reads
7-Zip with support for Brotli, Fast-LZMA2, Lizard, LZ4, LZ5 and Zstandard
lzbench is an in-memory benchmark of open-source LZ77/LZSS/LZMA compressors
Google Drive Public File Downloader when Curl/Wget Fails
High accuracy RAG for answering questions from scientific documents with citations
A one stop repository for generative AI research updates, interview resources, notebooks and much more!
MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
SingularityCE is the Community Edition of Singularity, an open source container platform designed to be simple, fast, and secure.
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification
MetagenOmic read Re-Assigner and abundance quantifier