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Pull requests: tjiangHIT/cuteSV

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Pull requests list

Fix AF output bug
#51 by tjiangHIT was merged Sep 3, 2021 Loading…
add force calling module
#19 by Meltpinkg was merged Oct 31, 2020 Loading…
Fix the force calling errors reported in #22
#24 by tjiangHIT was merged Dec 22, 2020 Loading…
Update read ID report
#25 by tjiangHIT was merged Dec 22, 2020 Loading…
fix a bug in parsing record
#26 by tjiangHIT was merged Dec 23, 2020 Loading…
Improve the performance of force calling
#27 by tjiangHIT was merged Dec 31, 2020 Loading…
Improve force calling
#29 by tjiangHIT was merged Jan 23, 2021 Loading…
Update force calling to avoid the error raised by abnormal SV type. #14
#33 by tjiangHIT was merged Apr 17, 2021 Loading…
Enable to report alternative sequence on the stage of SV force calling
#34 by tjiangHIT was merged Apr 23, 2021 Loading…
Fix several bugs
#37 by tjiangHIT was merged May 16, 2021 Loading…
Fix a bug about TRA force calling Ref #40
#41 by tjiangHIT was merged Jun 15, 2021 Loading…
Enable to detect full length SV. ref #44
#47 by tjiangHIT was merged Aug 6, 2021 Loading…
Fixing ----max_cluster_bias_DEL in README
#15 by wdecoster was merged Sep 19, 2020 Loading…
1
Add allele frequency. Ref #48
#49 by tjiangHIT was merged Aug 16, 2021 Loading…
Correct the reference allele
#68 by tjiangHIT was merged Jan 15, 2022 Loading…
1
fix the offset of POS
#70 by tjiangHIT was merged Jan 22, 2022 Loading…
Fix a bug that will report the fake SV
#71 by tjiangHIT was merged Jan 23, 2022 Loading…
Modify position of insertions
#73 by bnoyvert was merged Feb 15, 2022 Loading…
modify sigs extracted from split reads
#88 by tjiangHIT was merged Jun 1, 2022 Loading…
modify sigs extracted from split reads
#89 by tjiangHIT was merged Jun 1, 2022 Loading…
Fix bugs when performing assembly-based calling ref #93
#95 by tjiangHIT was merged Jul 31, 2022 Loading…
Enable to call high-quality SV through signature filtering. ref #76
#97 by tjiangHIT was merged Aug 6, 2022 Loading…
upgrate force calling module
#98 by tjiangHIT was merged Aug 29, 2022 Loading…
Update version 2.1.0
#132 by Meltpinkg was merged Oct 29, 2023 Loading…
add reference path for processing .cram files
#146 by fangli80 was merged May 31, 2024 Loading…
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