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Improve force calling #29

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merged 3 commits into from
Jan 23, 2021
Merged

Improve force calling #29

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af2ecb4
Merge pull request #3 from tjiangHIT/master
Meltpinkg Jan 23, 2021
998381a
fix a bug
Meltpinkg Jan 23, 2021
4cc2ed1
fix a bug
Meltpinkg Jan 23, 2021
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fix a bug
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@Meltpinkg
Meltpinkg committed Jan 23, 2021
commit 4cc2ed109b308c3909ef4eb6240eb8521d953461
8 changes: 4 additions & 4 deletions src/cuteSV/cuteSV
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Original file line number Diff line number Diff line change
Expand Up @@ -623,7 +623,7 @@ def main_ctrl(args, argv):
if pos < local_ref_len:
Task_list.append([i[0], pos, local_ref_len])

'''
#'''
analysis_pools = Pool(processes=int(args.threads))
os.mkdir("%ssignatures"%temporary_dir)
for i in Task_list:
Expand All @@ -641,8 +641,8 @@ def main_ctrl(args, argv):
analysis_pools.map_async(multi_run_wrapper, para)
analysis_pools.close()
analysis_pools.join()
'''
'''
#'''
#'''
logging.info("Rebuilding signatures of structural variants.")
analysis_pools = Pool(processes=int(args.threads))
cmd_del = ("cat %ssignatures/*.bed | grep DEL | sort -u | sort -k 2,2 -k 3,3n > %sDEL.sigs"%(temporary_dir, temporary_dir))
Expand All @@ -654,7 +654,7 @@ def main_ctrl(args, argv):
analysis_pools.map_async(exe, (i,))
analysis_pools.close()
analysis_pools.join()
'''
#'''
result = list()

if args.Ivcf != None:
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