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AlphaFold 3 inference pipeline.

Codes and scripts for "An artificial intelligence accelerated virtual screening platform for drug discovery"

Fast protein backbone generation with SE(3) flow matching.

User friendly and accurate binder design pipeline

AlphaFold Meets Flow Matching for Generating Protein Ensembles

Grok open release

Versatile computational pipeline for processing protein structure data for deep learning applications.

A generative model for programmable protein design

Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation

OmegaFold Release Code

A 3D-equivariant neural network for protein structure accuracy estimation

Open source code for AlphaFold 2.

A fast multi-threaded k-mer counter

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

A tool to find sequencing data and metadata from public databases.

Identify and quantify MHC eluted peptides from mass spectrometry raw data

pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data

PhIP-Seq data and designs from DeRisi Lab PND Investigations, 2018

Topics on theoretical, mathematical aspects of DL

Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework

Copy number variant detection from targeted DNA sequencing

VariantToolChest (VTC) is intended to be a powerful tool chest to analyze VCF files. I encourage anyone to contribute their tools and help improve existing tools. VTC currently provides two powerfu…

Subclonal Hierarchy Inference from Somatic Mutations

Processing BAMs/SAMs for Variant Calling on Apache Crunch

Buddy up to go to events.