maize_tissue-specific_GRN

This is the source code repository for the maize tissue-specific GRN project.

All codes were tested in R version 3.4.3 (2017-11-30).

Name		Name	Last commit message	Last commit date
.gitattributes		.gitattributes
.gitignore		.gitignore
10_mcl_clustering_go.R		10_mcl_clustering_go.R
1_prep_tissue_expr.R		1_prep_tissue_expr.R
2_expr_norm.R		2_expr_norm.R
3_tissue_TF.R		3_tissue_TF.R
4_calc_GENIE3_TF_regulator.R		4_calc_GENIE3_TF_regulator.R
5_edge_overlap.R		5_edge_overlap.R
6_TF_AUC.R		6_TF_AUC.R
701_KN1_FEA4_tissue_difference.R		701_KN1_FEA4_tissue_difference.R
702_GeneOntoly_gProfile_KN1FEA4O2_regulate_genes.R		702_GeneOntoly_gProfile_KN1FEA4O2_regulate_genes.R
801_plot_TF_degree_centrality.R		801_plot_TF_degree_centrality.R
802_plot_expression_TF_tissue.R		802_plot_expression_TF_tissue.R
803_plot_increase_enrichment.R		803_plot_increase_enrichment.R
804_plot_TFconnectivity_with_expression.R		804_plot_TFconnectivity_with_expression.R
805_plot_number_of_samples.R		805_plot_number_of_samples.R
901_compareGRN_chipseq.R		901_compareGRN_chipseq.R
902_save_KN1_FEA4_target_4tissue.R		902_save_KN1_FEA4_target_4tissue.R
README.md		README.md

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