Registered S3 method overwritten by 'GGally'

[BatoolMM]

Not sure if this is the right place to post this issue. ggplot used to work perfectly fine for ages but once I installed ggpolt2 after ggbio, I encounter this error:

Registered S3 method overwritten by 'GGally':
  method from   
  +.gg   ggplot2

Which makes the console stuck forever in the RStudio. I tried the same thing on my sister's MacBook and had the same error.

I used the following to install the packages:

install.packages("ggplot2")
BiocManager::install("ggbio")

To resolve the problem, I re-installed both R, all RFrameworks, and RStudio at least 3 times but still, the same problem occurs after installing ggpolt2 after ggbio. Things go back to normal if I remove either ggplot2 or ggbio.
I use R-4.0.3, RStudio v1.3.

[clauswilke]

Since ggbio is an extension package to ggplot2, I think you should report there. Maybe it pulls in an outdated version of GGally. When extension packages start overwriting our core functions (such as +.gg) we can't guarantee that anything works anymore, it's 100% on them.

Also, I notice that ggbio lists ggplot2 under Depends, so when you install ggbio you automatically install ggplot2 also. Not sure why you'd want to install it separately.
https://bioconductor.org/packages/release/bioc/html/ggbio.html

[BatoolMM]

Thank you for replying quickly.
I happen to install ggbio recently when I already have ggplot2. That's why I mentioned that the problem happens if ggbio is installed after ggplot2. Thank you again @clauswilke and enjoy the holidays! ☃️ 🎅.