Spring clean 2023 🧼

CODE_OF_CONDUCT.md → .github/CODE_OF_CONDUCT.md

@@ -6,8 +6,8 @@ We as members, contributors, and leaders pledge to make participation in our
 community a harassment-free experience for everyone, regardless of age, body
 size, visible or invisible disability, ethnicity, sex characteristics, gender
 identity and expression, level of experience, education, socio-economic status,
-nationality, personal appearance, race, religion, or sexual identity and
-orientation.
+nationality, personal appearance, race, caste, color, religion, or sexual
+identity and orientation.
 
 We pledge to act and interact in ways that contribute to an open, welcoming,
 diverse, inclusive, and healthy community.
@@ -21,25 +21,25 @@ community include:
 * Being respectful of differing opinions, viewpoints, and experiences
 * Giving and gracefully accepting constructive feedback
 * Accepting responsibility and apologizing to those affected by our mistakes,
-and learning from the experience
+  and learning from the experience
 * Focusing on what is best not just for us as individuals, but for the overall
-community
+  community
 
 Examples of unacceptable behavior include:
 
-* The use of sexualized language or imagery, and sexual attention or
-advances of any kind
+* The use of sexualized language or imagery, and sexual attention or advances of
+  any kind
 * Trolling, insulting or derogatory comments, and personal or political attacks
 * Public or private harassment
-* Publishing others' private information, such as a physical or email
-address, without their explicit permission
+* Publishing others' private information, such as a physical or email address,
+  without their explicit permission
 * Other conduct which could reasonably be considered inappropriate in a
-professional setting
+  professional setting
 
 ## Enforcement Responsibilities
 
-Community leaders are responsible for clarifying and enforcing our standards
-of acceptable behavior and will take appropriate and fair corrective action in
+Community leaders are responsible for clarifying and enforcing our standards of
+acceptable behavior and will take appropriate and fair corrective action in
 response to any behavior that they deem inappropriate, threatening, offensive,
 or harmful.
 
@@ -50,17 +50,17 @@ decisions when appropriate.
 
 ## Scope
 
-This Code of Conduct applies within all community spaces, and also applies
-when an individual is officially representing the community in public spaces.
-Examples of representing our community include using an official e-mail
-address, posting via an official social media account, or acting as an appointed
+This Code of Conduct applies within all community spaces, and also applies when
+an individual is officially representing the community in public spaces.
+Examples of representing our community include using an official e-mail address,
+posting via an official social media account, or acting as an appointed
 representative at an online or offline event.
 
 ## Enforcement
 
 Instances of abusive, harassing, or otherwise unacceptable behavior may be
-reported to the community leaders responsible for enforcement at [INSERT CONTACT
-METHOD]. All complaints will be reviewed and investigated promptly and fairly.
+reported to the community leaders responsible for enforcement at codeofconduct@posit.co. 
+All complaints will be reviewed and investigated promptly and fairly.
 
 All community leaders are obligated to respect the privacy and security of the
 reporter of any incident.
@@ -114,15 +114,13 @@ community.
 ## Attribution
 
 This Code of Conduct is adapted from the [Contributor Covenant][homepage],
-version 2.0,
-available at https://www.contributor-covenant.org/version/2/0/
-code_of_conduct.html.
+version 2.1, available at
+<https://www.contributor-covenant.org/version/2/1/code_of_conduct.html>.
 
-Community Impact Guidelines were inspired by [Mozilla's code of conduct
-enforcement ladder](https://github.com/mozilla/diversity).
-
-[homepage]: https://www.contributor-covenant.org
+Community Impact Guidelines were inspired by
+[Mozilla's code of conduct enforcement ladder][https://github.com/mozilla/inclusion].
 
 For answers to common questions about this code of conduct, see the FAQ at
-https://www.contributor-covenant.org/faq. Translations are available at https://
-www.contributor-covenant.org/translations.
+<https://www.contributor-covenant.org/faq>. Translations are available at <https://www.contributor-covenant.org/translations>.
+
+[homepage]: https://www.contributor-covenant.org

.github/workflows/R-CMD-check.yaml

@@ -1,4 +1,4 @@
-# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
 # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 #
 # NOTE: This workflow is overkill for most R packages and
@@ -23,9 +23,10 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - {os: macOS-latest,   r: 'release'}
+          - {os: macos-latest,   r: 'release'}
+
           - {os: windows-latest, r: 'release'}
-          # Use older ubuntu to maximise backward compatibility
+
           - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
           - {os: ubuntu-latest,   r: 'release'}
           - {os: ubuntu-latest,   r: 'oldrel-1'}
@@ -39,7 +40,7 @@ jobs:
       CXX14FLAGS: -Wall -g -02
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-pandoc@v2
 
@@ -51,7 +52,8 @@ jobs:
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: rcmdcheck
+          extra-packages: any::rcmdcheck
+          needs: check
 
       - name: Install dev reticulate
         run: pak::pkg_install('reticulate')
@@ -70,15 +72,10 @@ jobs:
         shell: Rscript {0}
 
       - uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: true
 
       - name: Show testthat output
         if: always()
         run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
         shell: bash
-
-      - name: Upload check results
-        if: failure()
-        uses: actions/upload-artifact@main
-        with:
-          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
-          path: check

.github/workflows/pkgdown.yaml

@@ -20,7 +20,7 @@ jobs:
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-pandoc@v2
 
@@ -51,7 +51,7 @@ jobs:
 
       - name: Deploy to GitHub pages 🚀
         if: github.event_name != 'pull_request'
-        uses: JamesIves/github-pages-deploy-action@4.1.4
+        uses: JamesIves/github-pages-deploy-action@v4.4.1
         with:
           clean: false
           branch: gh-pages

.github/workflows/pr-commands.yaml

@@ -1,4 +1,4 @@
-# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
 # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
   issue_comment:
@@ -14,22 +14,24 @@ jobs:
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
-      - uses: r-lib/actions/pr-fetch@v1
+      - uses: r-lib/actions/pr-fetch@v2
         with:
           repo-token: ${{ secrets.GITHUB_TOKEN }}
 
-      - uses: r-lib/actions/setup-r@v1
+      - uses: r-lib/actions/setup-r@v2
         with:
           use-public-rspm: true
 
-      - uses: r-lib/actions/setup-r-dependencies@v1
+      - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: roxygen2
+          extra-packages: any::roxygen2
+          needs: pr-document
 
       - name: Document
-        run: Rscript -e 'roxygen2::roxygenise()'
+        run: roxygen2::roxygenise()
+        shell: Rscript {0}
 
       - name: commit
         run: |
@@ -38,7 +40,7 @@ jobs:
           git add man/\* NAMESPACE
           git commit -m 'Document'
 
-      - uses: r-lib/actions/pr-push@v1
+      - uses: r-lib/actions/pr-push@v2
         with:
           repo-token: ${{ secrets.GITHUB_TOKEN }}
 
@@ -49,19 +51,21 @@ jobs:
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
-      - uses: r-lib/actions/pr-fetch@v1
+      - uses: r-lib/actions/pr-fetch@v2
         with:
           repo-token: ${{ secrets.GITHUB_TOKEN }}
 
-      - uses: r-lib/actions/setup-r@v1
+      - uses: r-lib/actions/setup-r@v2
 
       - name: Install dependencies
-        run: Rscript -e 'install.packages("styler")'
+        run: install.packages("styler")
+        shell: Rscript {0}
 
       - name: Style
-        run: Rscript -e 'styler::style_pkg()'
+        run: styler::style_pkg()
+        shell: Rscript {0}
 
       - name: commit
         run: |
@@ -70,6 +74,6 @@ jobs:
           git add \*.R
           git commit -m 'Style'
 
-      - uses: r-lib/actions/pr-push@v1
+      - uses: r-lib/actions/pr-push@v2
         with:
           repo-token: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/test-coverage.yaml

@@ -15,7 +15,7 @@ jobs:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v3
 
       - uses: r-lib/actions/setup-r@v2
         with:
@@ -43,5 +43,24 @@ jobs:
         shell: Rscript {0}
 
       - name: Test coverage
-        run: covr::codecov()
+        run: |
+          covr::codecov(
+            quiet = FALSE,
+            clean = FALSE,
+            install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package")
+          )
         shell: Rscript {0}
+
+      - name: Show testthat output
+        if: always()
+        run: |
+          ## --------------------------------------------------------------------
+          find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
+        shell: bash
+
+      - name: Upload test results
+        if: failure()
+        uses: actions/upload-artifact@v3
+        with:
+          name: coverage-test-failures
+          path: ${{ runner.temp }}/package

DESCRIPTION

@@ -5,7 +5,7 @@ Authors@R: c(
     person("Max", "Kuhn", , "max@posit.co", role = c("aut", "cre")),
     person("Davis", "Vaughan", , "davis@posit.co", role = "aut"),
     person("Emil", "Hvitfeldt", , "emilhhvitfeldt@gmail.com", role = "ctb"),
-    person("Posit Software PBC", role = c("cph", "fnd"))
+    person("Posit Software, PBC", role = c("cph", "fnd"))
   )
 Maintainer: Max Kuhn <max@posit.co>
 Description: A common interface is provided to allow users to specify a

NAMESPACE

@@ -345,6 +345,7 @@ importFrom(hardhat,extract_spec_parsnip)
 importFrom(hardhat,frequency_weights)
 importFrom(hardhat,importance_weights)
 importFrom(hardhat,tune)
+importFrom(lifecycle,deprecated)
 importFrom(magrittr,"%>%")
 importFrom(pillar,type_sum)
 importFrom(purrr,"%||%")

R/parsnip-package.R

@@ -11,7 +11,9 @@
 #' @importFrom dplyr arrange bind_cols bind_rows collect full_join group_by
 #' @importFrom dplyr mutate pull rename select starts_with summarise tally
 #' @importFrom generics tunable varying_args tune_args
+#' @importFrom ggplot2 autoplot
 #' @importFrom glue glue_collapse
+#' @importFrom lifecycle deprecated
 #' @importFrom pillar type_sum
 #' @importFrom purrr as_vector imap imap_lgl map map_chr map_dbl map_df map_dfr
 #' @importFrom purrr map_lgl %||%
@@ -27,7 +29,6 @@
 #' @importFrom utils capture.output getFromNamespace globalVariables head
 #' @importFrom utils methods stack
 #' @importFrom vctrs vec_size vec_unique
-#' @importFrom ggplot2 autoplot
 ## usethis namespace: end
 NULL
 

README.Rmd

@@ -13,11 +13,11 @@ knitr::opts_chunk$set(
 )
 ```
 
-# parsnip <a href='https://parsnip.tidymodels.org'><img src='man/figures/logo.png' style='float: right' height="139" /></a>
+# parsnip <a href="https://parsnip.tidymodels.org/"><img src="man/figures/logo.png" align="right" height="138" alt="a drawing of a parsnip on a beige background" /></a>
 
 <!-- badges: start -->
-[![R-CMD-check](https://github.com/tidymodels/parsnip/workflows/R-CMD-check/badge.svg)](https://github.com/tidymodels/parsnip/actions)
-[![Coverage status](https://codecov.io/gh/tidymodels/parsnip/branch/main/graph/badge.svg)](https://codecov.io/github/tidymodels/parsnip?branch=main)
+[![R-CMD-check](https://github.com/tidymodels/parsnip/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/tidymodels/parsnip/actions/workflows/R-CMD-check.yaml)
+[![Codecov test coverage](https://codecov.io/gh/tidymodels/parsnip/branch/main/graph/badge.svg)](https://app.codecov.io/gh/tidymodels/parsnip?branch=main)
 [![CRAN status](https://www.r-pkg.org/badges/version/parsnip)](https://CRAN.R-project.org/package=parsnip)
 [![Downloads](https://cranlogs.r-pkg.org/badges/parsnip)](https://CRAN.R-project.org/package=parsnip)
 [![lifecycle](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html)
@@ -37,8 +37,8 @@ install.packages("tidymodels")
 install.packages("parsnip")
 
 # Or the development version from GitHub:
-# install.packages("devtools")
-devtools::install_github("tidymodels/parsnip")
+# install.packages("pak")
+pak::pak("tidymodels/parsnip")
 ```
 
 

README.md

@@ -1,13 +1,13 @@
 
 <!-- README.md is generated from README.Rmd. Please edit that file -->
 
-# parsnip <a href='https://parsnip.tidymodels.org'><img src='man/figures/logo.png' style='float: right' height="139" /></a>
+# parsnip <a href="https://parsnip.tidymodels.org/"><img src="man/figures/logo.png" align="right" height="138" alt="a drawing of a parsnip on a beige background" /></a>
 
 <!-- badges: start -->
 
-[![R-CMD-check](https://github.com/tidymodels/parsnip/workflows/R-CMD-check/badge.svg)](https://github.com/tidymodels/parsnip/actions)
-[![Coverage
-status](https://codecov.io/gh/tidymodels/parsnip/branch/main/graph/badge.svg)](https://codecov.io/github/tidymodels/parsnip?branch=main)
+[![R-CMD-check](https://github.com/tidymodels/parsnip/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/tidymodels/parsnip/actions/workflows/R-CMD-check.yaml)
+[![Codecov test
+coverage](https://codecov.io/gh/tidymodels/parsnip/branch/main/graph/badge.svg)](https://app.codecov.io/gh/tidymodels/parsnip?branch=main)
 [![CRAN
 status](https://www.r-pkg.org/badges/version/parsnip)](https://CRAN.R-project.org/package=parsnip)
 [![Downloads](https://cranlogs.r-pkg.org/badges/parsnip)](https://CRAN.R-project.org/package=parsnip)
@@ -30,8 +30,8 @@ install.packages("tidymodels")
 install.packages("parsnip")
 
 # Or the development version from GitHub:
-# install.packages("devtools")
-devtools::install_github("tidymodels/parsnip")
+# install.packages("pak")
+pak::pak("tidymodels/parsnip")
 ```
 
 ## Getting started