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BioSAK Public
Forked from songweizhi/BioSAKA Swiss-Army-Knife for Bioinformaticians
Python GNU General Public License v3.0 UpdatedApr 5, 2022 -
Bacsort Public
Forked from rrwick/Bacsorta collection of scripts for organising bacterial genomes by species
Python GNU General Public License v3.0 UpdatedMar 18, 2022 -
spades_circular_contigs Public
Forked from rcedgar/spades_circular_contigsPython script to identify circular contigs from SPAdes assembler.
Python GNU General Public License v3.0 UpdatedFeb 19, 2022 -
Unicycler Public
Forked from rrwick/Unicyclerhybrid assembly pipeline for bacterial genomes
C++ GNU General Public License v3.0 UpdatedJan 28, 2022 -
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gan Public
Forked from telatin/gan📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria
Python GNU General Public License v3.0 UpdatedMay 25, 2021 -
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phylophlan Public
Forked from biobakery/phylophlanPrecise phylogenetic analysis of microbial isolates and genomes from metagenomes
Python MIT License UpdatedJan 27, 2021 -
gapseq Public
Forked from jotech/gapseqInformed prediction and analysis of bacteria metabolic pathways and genome-scale networks
HTML GNU General Public License v3.0 UpdatedOct 28, 2020 -
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bactaxR Public
Forked from lmc297/bactaxRBacterial taxonomy construction and evaluation in R
R UpdatedApr 18, 2020 -
pcm Public
Forked from lukejharmon/pcmA textbook for phylogenetic comparative methods.
HTML Other UpdatedSep 20, 2019 -
PAL2NAL Public
Forked from liaochenlanruo/PAL2NALA copy version from http://www.bork.embl.de/pal2nal/, thanks Mikita Suyama for send it to me for writing a bioconda recipe
Perl GNU General Public License v2.0 UpdatedJun 2, 2019 -
MetaCHIP Public
Forked from songweizhi/MetaCHIPHorizontal gene transfer (HGT) identification pipeline
Python GNU Affero General Public License v3.0 UpdatedOct 14, 2018 -
autoSeqMan Public
Forked from Sun-Yanbo/autoSeqManBatch Assembly of Contigs for Sanger Sequences
UpdatedJun 1, 2018 -
anvio Public
Forked from merenlab/anvioAn analysis and visualization platform for 'omics data
Python GNU General Public License v3.0 UpdatedMar 24, 2018 -
ncbi-genome-download Public
Forked from kblin/ncbi-genome-downloadScripts to download genomes from the NCBI FTP servers
Python Apache License 2.0 UpdatedJan 17, 2018 -
CompareM Public
Forked from donovan-h-parks/CompareMA toolbox for comparative genomics.
Python GNU General Public License v3.0 UpdatedOct 5, 2017 -
biom-format Public
Forked from biocore/biom-formatThe Biological Observation Matrix (BIOM) Format Project
Python Other UpdatedSep 28, 2017 -
split_sys_site Public
A stupid method to split an alignment of protein-coding sequences to synonymous sites and nonsynonymous sites
R UpdatedJun 18, 2017 -
get_phylomarkers Public
Forked from vinuesa/get_phylomarkershosts the code for the get_phylomarkers pipeline, which selects optimal markers for genome phylogenies
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get_homologues Public
Forked from eead-csic-compbio/get_homologuesGET_HOMOLOGUES: a versatile software package for pan-genome analysis
Perl Other UpdatedApr 25, 2017 -
db_reformatter Public
Forked from GenomicaMicrob/db_reformatterScript to reformat the EzBioCloud database to be used with mg_classifier
Shell UpdatedApr 5, 2017 -
RASTtk-Distribution Public
Forked from TheSEED/RASTtk-DistributionKBase distribution module for RASTtk.
UpdatedJan 14, 2016