gencode 46 M35 ensembl 112

thelovelab · May 14, 2024 · ada10da · ada10da
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diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,7 @@
+# tximeta 1.23.1
+
+* GENCODE 46 (H.s.), M35 (M.m), and Ensembl 112
+
 # tximeta 1.21.4
 
 * Changing language in docs to "digest" instead of "checksum".

diff --git a/inst/extdata/hashtable.csv b/inst/extdata/hashtable.csv
@@ -1,4 +1,5 @@
 source,organism,release,genome,fasta,gtf,sha256
+GENCODE,Homo sapiens,46,GRCh38,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_46/gencode.v46.transcripts.fa.gz,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_46/gencode.v46.annotation.gtf.gz,9edf59907918a715a58542b94221f7ad7d88c2edf40104a2ce1834a37c9df644
 GENCODE,Homo sapiens,45,GRCh38,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_45/gencode.v45.transcripts.fa.gz,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_45/gencode.v45.annotation.gtf.gz,c2d602f6187aa94a912f24ba32e6984c62bf1337d2da143df42c9cd1ee4593ae
 GENCODE,Homo sapiens,44,GRCh38,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_44/gencode.v44.transcripts.fa.gz,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_44/gencode.v44.annotation.gtf.gz,fd88296600b98e1333273e657145662fd489a41f40296d387ab4265db2dc0f1c
 GENCODE,Homo sapiens,43,GRCh38,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_43/gencode.v43.transcripts.fa.gz,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_43/gencode.v43.annotation.gtf.gz,39d9ea9f308ee7e18cdb034c1d064c3a9722df115147533a2ec237fb7cecfca9
@@ -22,6 +23,7 @@ GENCODE,Homo sapiens,26,GRCh38,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode
 GENCODE,Homo sapiens,25,GRCh38,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_25/gencode.v25.transcripts.fa.gz,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_25/gencode.v25.annotation.gtf.gz,75c7c561ad7291bb2dfc7214f3b0c766eb69e3406194a6671af956df59655462
 GENCODE,Homo sapiens,24,GRCh38,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_24/gencode.v24.transcripts.fa.gz,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_24/gencode.v24.annotation.gtf.gz,f4bbbfc1b55cf5864f7f0c31c47ce2d2f8054183e5f824c7568cae708a01c13d
 GENCODE,Homo sapiens,23,GRCh38,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_23/gencode.v23.transcripts.fa.gz,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_23/gencode.v23.annotation.gtf.gz,e2a174c705476a5b42d639f6b64a634cb8b1d656cc99a601183c812c1b7f67a1
+GENCODE,Mus musculus,M35,GRCm39,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M35/gencode.vM35.transcripts.fa.gz,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M35/gencode.vM35.annotation.gtf.gz,b22c0077c27a8127cdd7e664810bf3ce95b0ef2021fb4802c699267388630870
 GENCODE,Mus musculus,M34,GRCm39,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M34/gencode.vM34.transcripts.fa.gz,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M34/gencode.vM34.annotation.gtf.gz,c0bf1b46db288bdf947208ef6410a0ced47fa770ab5284a1b231d958b283728b
 GENCODE,Mus musculus,M33,GRCm39,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M33/gencode.vM33.transcripts.fa.gz,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M33/gencode.vM33.annotation.gtf.gz,7567da814f0b61a0ab237f81c5cb013885eae14af499585a4c065ae789da7fe8
 GENCODE,Mus musculus,M32,GRCm39,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M32/gencode.vM32.transcripts.fa.gz,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M32/gencode.vM32.annotation.gtf.gz,9391e456685967d1b2086f0cd1addadccb6037eadcfc272d7e8a68f641aa6eb0
@@ -51,6 +53,7 @@ GENCODE,Mus musculus,M9,GRCm38,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode
 GENCODE,Mus musculus,M8,GRCm38,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M8/gencode.vM8.transcripts.fa.gz,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M8/gencode.vM8.annotation.gtf.gz,380445534729050688b4c2b8707c0067cd354eedd48b04a50504e3bd20cf0390
 GENCODE,Mus musculus,M7,GRCm38,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M7/gencode.vM7.transcripts.fa.gz,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M7/gencode.vM7.annotation.gtf.gz,c55323119ab8f7e79767e1f403207a380e8acd30a4bdd4ab02e7a6136d674ae8
 GENCODE,Mus musculus,M6,GRCm38,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M6/gencode.vM6.transcripts.fa.gz,ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M6/gencode.vM6.annotation.gtf.gz,f1d2b24f4eeff5aa1103fc3ed70df80b5fea326a2e01da36bb543f58be79bf3c
+Ensembl,Homo sapiens,112,GRCh38,ftp://ftp.ensembl.org/pub/release-112/fasta/homo_sapiens/cdna/Homo_sapiens.GRCh38.cdna.all.fa.gz,ftp://ftp.ensembl.org/pub/release-112/gtf/homo_sapiens/Homo_sapiens.GRCh38.112.gtf.gz,258d84f121793e2bb1ec6c2fea975e710b7f7d7f489353b99e46f84e47c5f335
 Ensembl,Homo sapiens,111,GRCh38,ftp://ftp.ensembl.org/pub/release-111/fasta/homo_sapiens/cdna/Homo_sapiens.GRCh38.cdna.all.fa.gz,ftp://ftp.ensembl.org/pub/release-111/gtf/homo_sapiens/Homo_sapiens.GRCh38.111.gtf.gz,2f3e6ee7570051da52b27e5ed06fb3e2c65200f9897515cfb9e5a55bc0f7988a
 Ensembl,Homo sapiens,110,GRCh38,ftp://ftp.ensembl.org/pub/release-110/fasta/homo_sapiens/cdna/Homo_sapiens.GRCh38.cdna.all.fa.gz,ftp://ftp.ensembl.org/pub/release-110/gtf/homo_sapiens/Homo_sapiens.GRCh38.110.gtf.gz,a10f8d5440352b4e9cb3dcae08b1accab4432777f1f5d65158c1396c49bf54ac
 Ensembl,Homo sapiens,109,GRCh38,ftp://ftp.ensembl.org/pub/release-109/fasta/homo_sapiens/cdna/Homo_sapiens.GRCh38.cdna.all.fa.gz,ftp://ftp.ensembl.org/pub/release-109/gtf/homo_sapiens/Homo_sapiens.GRCh38.109.gtf.gz,590e67fe9dfc0a3916ba10605866e921d1443027f5339547d6f8a4c1ff8904e2
@@ -87,6 +90,7 @@ Ensembl,Homo sapiens,79,GRCh38,ftp://ftp.ensembl.org/pub/release-79/fasta/homo_s
 Ensembl,Homo sapiens,78,GRCh38,ftp://ftp.ensembl.org/pub/release-78/fasta/homo_sapiens/cdna/Homo_sapiens.GRCh38.cdna.all.fa.gz,ftp://ftp.ensembl.org/pub/release-78/gtf/homo_sapiens/Homo_sapiens.GRCh38.78.gtf.gz,b3b73a039d1f8e508cd226a41797e5900e8d78c13a28db0681a3c6f445d6c56e
 Ensembl,Homo sapiens,77,GRCh38,ftp://ftp.ensembl.org/pub/release-77/fasta/homo_sapiens/cdna/Homo_sapiens.GRCh38.cdna.all.fa.gz,ftp://ftp.ensembl.org/pub/release-77/gtf/homo_sapiens/Homo_sapiens.GRCh38.77.gtf.gz,b3b73a039d1f8e508cd226a41797e5900e8d78c13a28db0681a3c6f445d6c56e
 Ensembl,Homo sapiens,76,GRCh38,ftp://ftp.ensembl.org/pub/release-76/fasta/homo_sapiens/cdna/Homo_sapiens.GRCh38.cdna.all.fa.gz,ftp://ftp.ensembl.org/pub/release-76/gtf/homo_sapiens/Homo_sapiens.GRCh38.76.gtf.gz,2c39dc5f6f1659d8ceaca7227349cf3c54f08d5acc42057cac1bb9e53b0f5faf
+Ensembl,Mus musculus,112,GRCm39,ftp://ftp.ensembl.org/pub/release-112/fasta/mus_musculus/cdna/Mus_musculus.GRCm39.cdna.all.fa.gz,ftp://ftp.ensembl.org/pub/release-112/gtf/mus_musculus/Mus_musculus.GRCm39.112.gtf.gz,c3990ac7f43a827958b69aee21459e5b1174ca8003a0fffe788008ea87cbae36
 Ensembl,Mus musculus,111,GRCm39,ftp://ftp.ensembl.org/pub/release-111/fasta/mus_musculus/cdna/Mus_musculus.GRCm39.cdna.all.fa.gz,ftp://ftp.ensembl.org/pub/release-111/gtf/mus_musculus/Mus_musculus.GRCm39.111.gtf.gz,c8a632f44d0f1b1d18d55b321612d0251663b18cd3006107178e5bc4f7c2d3af
 Ensembl,Mus musculus,110,GRCm39,ftp://ftp.ensembl.org/pub/release-110/fasta/mus_musculus/cdna/Mus_musculus.GRCm39.cdna.all.fa.gz,ftp://ftp.ensembl.org/pub/release-110/gtf/mus_musculus/Mus_musculus.GRCm39.110.gtf.gz,65189e23739773348d485dff811c07352ca482595410462729e5336c1c7c33ce
 Ensembl,Mus musculus,109,GRCm39,ftp://ftp.ensembl.org/pub/release-109/fasta/mus_musculus/cdna/Mus_musculus.GRCm39.cdna.all.fa.gz,ftp://ftp.ensembl.org/pub/release-109/gtf/mus_musculus/Mus_musculus.GRCm39.109.gtf.gz,babc8f1791dd7e8b5de748fffedfb95d4e1db83fe1eec20f159c55789114c7b3
@@ -123,6 +127,7 @@ Ensembl,Mus musculus,79,GRCm38,ftp://ftp.ensembl.org/pub/release-79/fasta/mus_mu
 Ensembl,Mus musculus,78,GRCm38,ftp://ftp.ensembl.org/pub/release-78/fasta/mus_musculus/cdna/Mus_musculus.GRCm38.cdna.all.fa.gz,ftp://ftp.ensembl.org/pub/release-78/gtf/mus_musculus/Mus_musculus.GRCm38.78.gtf.gz,3029f156532bfc8eaa8f2d3facbfd62d04b9204e666932525ea4adde91ca07ce
 Ensembl,Mus musculus,77,GRCm38,ftp://ftp.ensembl.org/pub/release-77/fasta/mus_musculus/cdna/Mus_musculus.GRCm38.cdna.all.fa.gz,ftp://ftp.ensembl.org/pub/release-77/gtf/mus_musculus/Mus_musculus.GRCm38.77.gtf.gz,86861705ff90893db6cdb16e334103e9fe340e6355372cd59e53a47c15785086
 Ensembl,Mus musculus,76,GRCm38,ftp://ftp.ensembl.org/pub/release-76/fasta/mus_musculus/cdna/Mus_musculus.GRCm38.cdna.all.fa.gz,ftp://ftp.ensembl.org/pub/release-76/gtf/mus_musculus/Mus_musculus.GRCm38.76.gtf.gz,86861705ff90893db6cdb16e334103e9fe340e6355372cd59e53a47c15785086
+Ensembl,Drosophila melanogaster,112,BDGP6.46,ftp://ftp.ensembl.org/pub/release-112/fasta/drosophila_melanogaster/cdna/Drosophila_melanogaster.BDGP6.46.cdna.all.fa.gz,ftp://ftp.ensembl.org/pub/release-112/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP6.46.112.gtf.gz,5d4b1530260cf3caf1c0b34452f817adaedfe148d9ca9cd693324c8d4259c3d4
 Ensembl,Drosophila melanogaster,111,BDGP6.46,ftp://ftp.ensembl.org/pub/release-111/fasta/drosophila_melanogaster/cdna/Drosophila_melanogaster.BDGP6.46.cdna.all.fa.gz,ftp://ftp.ensembl.org/pub/release-111/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP6.46.111.gtf.gz,5d4b1530260cf3caf1c0b34452f817adaedfe148d9ca9cd693324c8d4259c3d4
 Ensembl,Drosophila melanogaster,110,BDGP6.46,ftp://ftp.ensembl.org/pub/release-110/fasta/drosophila_melanogaster/cdna/Drosophila_melanogaster.BDGP6.46.cdna.all.fa.gz,ftp://ftp.ensembl.org/pub/release-110/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP6.46.110.gtf.gz,5d4b1530260cf3caf1c0b34452f817adaedfe148d9ca9cd693324c8d4259c3d4
 Ensembl,Drosophila melanogaster,110,BDGP6.32,ftp://ftp.ensembl.org/pub/release-110/fasta/drosophila_melanogaster/cdna/Drosophila_melanogaster.BDGP6.32.cdna.all.fa.gz,ftp://ftp.ensembl.org/pub/release-110/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP6.32.110.gtf.gz,38124a7ab25470f7c22a8fea45328ef50521838ed37e1c4b61e1ca8ea1882366
@@ -157,6 +162,7 @@ Ensembl,Drosophila melanogaster,82,BDGP6,ftp://ftp.ensembl.org/pub/release-82/fa
 Ensembl,Drosophila melanogaster,81,BDGP6,ftp://ftp.ensembl.org/pub/release-81/fasta/drosophila_melanogaster/cdna/Drosophila_melanogaster.BDGP6.cdna.all.fa.gz,ftp://ftp.ensembl.org/pub/release-81/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP6.81.gtf.gz,f09e4c9cd1b08ef829f3a64c62d6a05c5d7d8cd482d2c4f76469ac11b37f55c9
 Ensembl,Drosophila melanogaster,80,BDGP6,ftp://ftp.ensembl.org/pub/release-80/fasta/drosophila_melanogaster/cdna/Drosophila_melanogaster.BDGP6.cdna.all.fa.gz,ftp://ftp.ensembl.org/pub/release-80/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP6.80.gtf.gz,f09e4c9cd1b08ef829f3a64c62d6a05c5d7d8cd482d2c4f76469ac11b37f55c9
 Ensembl,Drosophila melanogaster,79,BDGP6,ftp://ftp.ensembl.org/pub/release-79/fasta/drosophila_melanogaster/cdna/Drosophila_melanogaster.BDGP6.cdna.all.fa.gz,ftp://ftp.ensembl.org/pub/release-79/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP6.79.gtf.gz,f09e4c9cd1b08ef829f3a64c62d6a05c5d7d8cd482d2c4f76469ac11b37f55c9
+Ensembl,Homo sapiens,112,GRCh38,ftp://ftp.ensembl.org/pub/release-112/fasta/homo_sapiens/cdna/Homo_sapiens.GRCh38.cdna.all.fa.gz ftp://ftp.ensembl.org/pub/release-112/fasta/homo_sapiens/ncrna/Homo_sapiens.GRCh38.ncrna.fa.gz,ftp://ftp.ensembl.org/pub/release-112/gtf/homo_sapiens/Homo_sapiens.GRCh38.112.gtf.gz,95cc1e1d350b8f762125601727c0eace4b626c41502e4699b83a78cd9e8145e9
 Ensembl,Homo sapiens,111,GRCh38,ftp://ftp.ensembl.org/pub/release-111/fasta/homo_sapiens/cdna/Homo_sapiens.GRCh38.cdna.all.fa.gz ftp://ftp.ensembl.org/pub/release-111/fasta/homo_sapiens/ncrna/Homo_sapiens.GRCh38.ncrna.fa.gz,ftp://ftp.ensembl.org/pub/release-111/gtf/homo_sapiens/Homo_sapiens.GRCh38.111.gtf.gz,2f11dc136d39270b3e6088c07703d85be1a08789486ba77cab716ecb81866ad6
 Ensembl,Homo sapiens,110,GRCh38,ftp://ftp.ensembl.org/pub/release-110/fasta/homo_sapiens/cdna/Homo_sapiens.GRCh38.cdna.all.fa.gz ftp://ftp.ensembl.org/pub/release-110/fasta/homo_sapiens/ncrna/Homo_sapiens.GRCh38.ncrna.fa.gz,ftp://ftp.ensembl.org/pub/release-110/gtf/homo_sapiens/Homo_sapiens.GRCh38.110.gtf.gz,e1fcf25ebce27d435fb2b2b422c32781c1d12140d2d560fbfc351192c1bd44cf
 Ensembl,Homo sapiens,109,GRCh38,ftp://ftp.ensembl.org/pub/release-109/fasta/homo_sapiens/cdna/Homo_sapiens.GRCh38.cdna.all.fa.gz ftp://ftp.ensembl.org/pub/release-109/fasta/homo_sapiens/ncrna/Homo_sapiens.GRCh38.ncrna.fa.gz,ftp://ftp.ensembl.org/pub/release-109/gtf/homo_sapiens/Homo_sapiens.GRCh38.109.gtf.gz,d6afbd38a652ece00d286fca49c7ef1cedcf3419bededecec9e1205f9f8751d7
@@ -193,6 +199,7 @@ Ensembl,Homo sapiens,79,GRCh38,ftp://ftp.ensembl.org/pub/release-79/fasta/homo_s
 Ensembl,Homo sapiens,78,GRCh38,ftp://ftp.ensembl.org/pub/release-78/fasta/homo_sapiens/cdna/Homo_sapiens.GRCh38.cdna.all.fa.gz ftp://ftp.ensembl.org/pub/release-78/fasta/homo_sapiens/ncrna/Homo_sapiens.GRCh38.ncrna.fa.gz,ftp://ftp.ensembl.org/pub/release-78/gtf/homo_sapiens/Homo_sapiens.GRCh38.78.gtf.gz,2d5c45feab62b177764cd4088991dcc87f580b0f27f8cde2107d4d32df2e77e9
 Ensembl,Homo sapiens,77,GRCh38,ftp://ftp.ensembl.org/pub/release-77/fasta/homo_sapiens/cdna/Homo_sapiens.GRCh38.cdna.all.fa.gz ftp://ftp.ensembl.org/pub/release-77/fasta/homo_sapiens/ncrna/Homo_sapiens.GRCh38.ncrna.fa.gz,ftp://ftp.ensembl.org/pub/release-77/gtf/homo_sapiens/Homo_sapiens.GRCh38.77.gtf.gz,2d5c45feab62b177764cd4088991dcc87f580b0f27f8cde2107d4d32df2e77e9
 Ensembl,Homo sapiens,76,GRCh38,ftp://ftp.ensembl.org/pub/release-76/fasta/homo_sapiens/cdna/Homo_sapiens.GRCh38.cdna.all.fa.gz ftp://ftp.ensembl.org/pub/release-76/fasta/homo_sapiens/ncrna/Homo_sapiens.GRCh38.ncrna.fa.gz,ftp://ftp.ensembl.org/pub/release-76/gtf/homo_sapiens/Homo_sapiens.GRCh38.76.gtf.gz,e23d4f8ccbfa7bff14dee4076cde7558e91134c11af60463857272a5b28c8a1d
+Ensembl,Mus musculus,112,GRCm39,ftp://ftp.ensembl.org/pub/release-112/fasta/mus_musculus/cdna/Mus_musculus.GRCm39.cdna.all.fa.gz ftp://ftp.ensembl.org/pub/release-112/fasta/mus_musculus/ncrna/Mus_musculus.GRCm39.ncrna.fa.gz,ftp://ftp.ensembl.org/pub/release-112/gtf/mus_musculus/Mus_musculus.GRCm39.112.gtf.gz,a7799d8f630b4e39fdb40254238c36f2a05a2ab2edfe7b31237e33f2ce4f9383
 Ensembl,Mus musculus,111,GRCm39,ftp://ftp.ensembl.org/pub/release-111/fasta/mus_musculus/cdna/Mus_musculus.GRCm39.cdna.all.fa.gz ftp://ftp.ensembl.org/pub/release-111/fasta/mus_musculus/ncrna/Mus_musculus.GRCm39.ncrna.fa.gz,ftp://ftp.ensembl.org/pub/release-111/gtf/mus_musculus/Mus_musculus.GRCm39.111.gtf.gz,c7c870014f67abe9f13e720cbde696b4e2a6e0c00eac9c363dae90ad57e79885
 Ensembl,Mus musculus,110,GRCm39,ftp://ftp.ensembl.org/pub/release-110/fasta/mus_musculus/cdna/Mus_musculus.GRCm39.cdna.all.fa.gz ftp://ftp.ensembl.org/pub/release-110/fasta/mus_musculus/ncrna/Mus_musculus.GRCm39.ncrna.fa.gz,ftp://ftp.ensembl.org/pub/release-110/gtf/mus_musculus/Mus_musculus.GRCm39.110.gtf.gz,aeaab93fae488a96755b6bb0b1bb7e47bce4b9cbc9b8e0537dddcc3e7784d43f
 Ensembl,Mus musculus,109,GRCm39,ftp://ftp.ensembl.org/pub/release-109/fasta/mus_musculus/cdna/Mus_musculus.GRCm39.cdna.all.fa.gz ftp://ftp.ensembl.org/pub/release-109/fasta/mus_musculus/ncrna/Mus_musculus.GRCm39.ncrna.fa.gz,ftp://ftp.ensembl.org/pub/release-109/gtf/mus_musculus/Mus_musculus.GRCm39.109.gtf.gz,5dbf788011e2c4b89ff17efe1b88e419320f06d806a954ad5758d2b92b633a30
@@ -229,6 +236,7 @@ Ensembl,Mus musculus,79,GRCm38,ftp://ftp.ensembl.org/pub/release-79/fasta/mus_mu
 Ensembl,Mus musculus,78,GRCm38,ftp://ftp.ensembl.org/pub/release-78/fasta/mus_musculus/cdna/Mus_musculus.GRCm38.cdna.all.fa.gz ftp://ftp.ensembl.org/pub/release-78/fasta/mus_musculus/ncrna/Mus_musculus.GRCm38.ncrna.fa.gz,ftp://ftp.ensembl.org/pub/release-78/gtf/mus_musculus/Mus_musculus.GRCm38.78.gtf.gz,0b19f405482614f3eaf617d415f2e8724371f9c0b1fd0f3b2ce3b8e4d4a091f8
 Ensembl,Mus musculus,77,GRCm38,ftp://ftp.ensembl.org/pub/release-77/fasta/mus_musculus/cdna/Mus_musculus.GRCm38.cdna.all.fa.gz ftp://ftp.ensembl.org/pub/release-77/fasta/mus_musculus/ncrna/Mus_musculus.GRCm38.ncrna.fa.gz,ftp://ftp.ensembl.org/pub/release-77/gtf/mus_musculus/Mus_musculus.GRCm38.77.gtf.gz,2067a058b490d9ee800dd2bd58694e15e5bd6949ecdecf9afb57b1109c07a3d7
 Ensembl,Mus musculus,76,GRCm38,ftp://ftp.ensembl.org/pub/release-76/fasta/mus_musculus/cdna/Mus_musculus.GRCm38.cdna.all.fa.gz ftp://ftp.ensembl.org/pub/release-76/fasta/mus_musculus/ncrna/Mus_musculus.GRCm38.ncrna.fa.gz,ftp://ftp.ensembl.org/pub/release-76/gtf/mus_musculus/Mus_musculus.GRCm38.76.gtf.gz,2067a058b490d9ee800dd2bd58694e15e5bd6949ecdecf9afb57b1109c07a3d7
+Ensembl,Drosophila melanogaster,112,BDGP6.46,ftp://ftp.ensembl.org/pub/release-112/fasta/drosophila_melanogaster/cdna/Drosophila_melanogaster.BDGP6.46.cdna.all.fa.gz ftp://ftp.ensembl.org/pub/release-112/fasta/drosophila_melanogaster/ncrna/Drosophila_melanogaster.BDGP6.46.ncrna.fa.gz,ftp://ftp.ensembl.org/pub/release-112/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP6.46.112.gtf.gz,61ab886b5a2fe5f13b49a94622f7c3d19466942e24c42c7fdcb24e83e6651d2c
 Ensembl,Drosophila melanogaster,111,BDGP6.46,ftp://ftp.ensembl.org/pub/release-111/fasta/drosophila_melanogaster/cdna/Drosophila_melanogaster.BDGP6.46.cdna.all.fa.gz ftp://ftp.ensembl.org/pub/release-111/fasta/drosophila_melanogaster/ncrna/Drosophila_melanogaster.BDGP6.46.ncrna.fa.gz,ftp://ftp.ensembl.org/pub/release-111/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP6.46.111.gtf.gz,61ab886b5a2fe5f13b49a94622f7c3d19466942e24c42c7fdcb24e83e6651d2c
 Ensembl,Drosophila melanogaster,110,BDGP6.46,ftp://ftp.ensembl.org/pub/release-110/fasta/drosophila_melanogaster/cdna/Drosophila_melanogaster.BDGP6.46.cdna.all.fa.gz ftp://ftp.ensembl.org/pub/release-110/fasta/drosophila_melanogaster/ncrna/Drosophila_melanogaster.BDGP6.46.ncrna.fa.gz,ftp://ftp.ensembl.org/pub/release-110/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP6.46.110.gtf.gz,61ab886b5a2fe5f13b49a94622f7c3d19466942e24c42c7fdcb24e83e6651d2c
 Ensembl,Drosophila melanogaster,110,BDGP6.32,ftp://ftp.ensembl.org/pub/release-110/fasta/drosophila_melanogaster/cdna/Drosophila_melanogaster.BDGP6.32.cdna.all.fa.gz ftp://ftp.ensembl.org/pub/release-110/fasta/drosophila_melanogaster/ncrna/Drosophila_melanogaster.BDGP6.32.ncrna.fa.gz,ftp://ftp.ensembl.org/pub/release-110/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP6.32.110.gtf.gz,f3202d35f50468174db8874327d900133c4317632106a6c6bfbd3b2e757e9afd

diff --git a/inst/script/metatximeta.R b/inst/script/metatximeta.R
@@ -107,12 +107,12 @@ hashit <- function(source, organism, release, catNC=FALSE, ...) {
 # download method
 m <- "wget"
 
-i <- 45
+i <- 46
 hashit("GENCODE", "Homo sapiens", i, method=m)
-i <- 34
+i <- 35
 hashit("GENCODE", "Mus musculus", paste0("M",i), method=m)
 #
-i <- 111
+i <- 112
 hashit("Ensembl", "Homo sapiens", i, method=m)
 hashit("Ensembl", "Mus musculus", i, method=m)
 hashit("Ensembl", "Drosophila melanogaster", i, method=m)