step5 update batch

tf2 · Jul 6, 2023 · 8753bf5 · 8753bf5
1 parent 37fea0f
commit 8753bf5
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Showing 3 changed files with 2 additions and 1 deletion.
diff --git a/src/Rbin/NAMESPACE b/src/Rbin/NAMESPACE
@@ -18,6 +18,7 @@ generate_correlation_chunk_batch,
 get_references,
 get_ref_sample_names_by_type,
 batch_get_references_to_rbin,
+get_references_return,
 processLogRtoBin,
 run_hmm_rbin
 )

diff --git a/src/Rbin/R/Rbin.R b/src/Rbin/R/Rbin.R
@@ -609,7 +609,7 @@ return(data.frame(index, data, ref_med_cov, matched_med_cov, mismatched_med_cov)
 batch_get_references_to_rbin <- function(index_file, gender_file, rbin_dir,
                                         cor_dir, bin_dir, batch_size = 1000, target_files_size, start_pos, cor_cut = 0.9, skip_em=FALSE) {
     gens = read.table(gender_file, header=T)
-    sample_names =as.character(gens[start_pos:((start_pos-target_files_size)-1),1])
+    sample_names = as.character(gens[start_pos:((start_pos+target_size)-1),1])
     for(x in 1:length(sample_names)) {
         sample_name = sample_names[x]
         data = get_references_return(sample_name, index_file, gender_file, cor_dir, bin_dir, batch_size, cor_cut, skip_em)

diff --git a/src/Rbin_1.1.tar.gz b/src/Rbin_1.1.tar.gz