It would be helpful to add a setting that lets you set a custom string that has to be present in the text of a checkbox item for that item to be treated as a task. This would be a setting that applies across the entire vault and causes all checkboxes that don't contain that string to be ignored by the Task Genius plugin as they are not considered tasks. For example, if you set the string to todo:
This would allow you to use checkboxes in your notes for purposes other than task management while using the Task Genius plugin.
This feature exists in the Tasks plugin where it is called Global Filter. Instituting it in Task Genius would also improve compatibility with Tasks and make it easier for people who have built vaults around the Tasks plugin to switch over or add Task Genius to their existing setup.