Include NNDC decay data in the final Carsus HDF output (#350) #104
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| # For more information about TARDIS pipelines, please refer to: | |
| # | |
| # https://tardis-sn.github.io/tardis/development/continuous_integration.html | |
| name: docs | |
| on: | |
| push: | |
| branches: | |
| - '*' | |
| workflow_dispatch: | |
| schedule: | |
| - cron: '0 0 * * 0' # run at midnight every Sunday | |
| concurrency: | |
| group: docs-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| XUVTOP: /tmp/chianti | |
| CHIANTI_DL_URL: https://download.chiantidatabase.org | |
| CHIANTI_DB_VER: CHIANTI_v9.0.1_database.tar.gz | |
| CMFGEN_DL_URL: http://kookaburra.phyast.pitt.edu/hillier/cmfgen_files | |
| CMFGEN_DB_VER: atomic_data_15nov16.tar.gz | |
| jobs: | |
| build: | |
| # The `docs` workflow is triggered when a commit is pushed to any branch | |
| # of the main repo or fork, but the `build` job starts when one of these | |
| # conditions is met: | |
| # | |
| # a) the branch is `master` | |
| # b) the branch name contains the word `doc(s)` | |
| # c) the commit message includes the a valid tag | |
| # d) the workflow has been triggered manually | |
| if: github.ref == 'refs/heads/master' || | |
| github.event_name == 'workflow_dispatch' || | |
| contains(github.ref, 'doc') || | |
| contains(github.event.head_commit.message, '[build docs]') || | |
| contains(github.event.head_commit.message, '[build_docs]') || | |
| contains(github.event.head_commit.message, '[build doc]') || | |
| contains(github.event.head_commit.message, '[build_doc]') | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.XUVTOP }} | |
| key: ${{ env.CHIANTI_DB_VER }} | |
| id: chianti-cache | |
| - name: Download Chianti database | |
| run: | | |
| mkdir -p ${{ env.XUVTOP }} | |
| wget -q ${{ env.CHIANTI_DL_URL }}/${{ env.CHIANTI_DB_VER }} -O ${{ env.XUVTOP }}/chianti.tar.gz | |
| tar -zxf ${{ env.XUVTOP }}/chianti.tar.gz -C ${{ env.XUVTOP }} --warning=none | |
| if: steps.chianti-cache.outputs.cache-hit != 'true' | |
| - uses: actions/cache@v2 | |
| with: | |
| path: /tmp/atomic | |
| key: ${{ env.CMFGEN_DB_VER }} | |
| id: cmfgen-cache | |
| - name: Download CMFGEN database | |
| run: | | |
| wget -q -U "Mozilla/4.0" ${{ env.CMFGEN_DL_URL }}/${{ env.CMFGEN_DB_VER }} -O /tmp/atomic.tar.gz | |
| tar -zxf /tmp/atomic.tar.gz -C /tmp | |
| if: steps.cmfgen-cache.outputs.cache-hit != 'true' | |
| - name: Setup environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| environment-file: carsus_env3.yml | |
| activate-environment: carsus | |
| use-mamba: true | |
| - name: Install package | |
| shell: bash -l {0} | |
| run: pip install -e . | |
| - name: Build documentation | |
| shell: bash -l {0} | |
| run: cd docs/; make html | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| name: html-dir | |
| path: docs/_build/html | |
| deploy: | |
| needs: build | |
| # The website is deployed to the root of the `gh-pages` branch of the main | |
| # repository or fork, only after a commit is pushed to the `master` branch, | |
| # and the result will be displayed at: | |
| # | |
| # tardis-sn.github.io/carsus (main repository) | |
| # OR <username>.github.io/carsus (forks) | |
| if: github.ref == 'refs/heads/master' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/download-artifact@v2 | |
| with: | |
| name: html-dir | |
| path: docs/_build/html | |
| - name: Deploy main site | |
| uses: peaceiris/actions-gh-pages@v3 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_branch: gh-pages | |
| publish_dir: docs/_build/html | |
| force_orphan: true | |
| preview: | |
| needs: build | |
| # Branch preview is only available on forks, and requires at least one of | |
| # these conditions to be met: | |
| # | |
| # a) the branch name contains the word `doc(s)` | |
| # b) commit message includes the a valid tag | |
| # c) the workflow is triggered manually | |
| # | |
| # Result will be displayed at: | |
| # | |
| # <username>.github.io/carsus/branch/<branch-name> | |
| if: github.repository_owner != 'tardis-sn' && | |
| github.ref != 'refs/heads/master' && ( | |
| github.event_name == 'workflow_dispatch' || | |
| contains(github.ref, 'doc') || | |
| contains(github.event.head_commit.message, '[build docs]') || | |
| contains(github.event.head_commit.message, '[build_docs]') || | |
| contains(github.event.head_commit.message, '[build doc]') || | |
| contains(github.event.head_commit.message, '[build_doc]')) | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/download-artifact@v2 | |
| with: | |
| name: html-dir | |
| path: docs/_build/html | |
| - name: Get branch name | |
| run: echo "##[set-output name=branch;]$(echo ${GITHUB_REF#refs/heads/})" | |
| id: get_branch_name | |
| - name: Deploy branch site | |
| uses: peaceiris/actions-gh-pages@v3 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_branch: gh-pages | |
| publish_dir: docs/_build/html | |
| destination_dir: branch/${{ steps.get_branch_name.outputs.branch }} | |
| force_orphan: false |