Skip to content

Update 470-medicine.txt #154

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 1 commit into from
Jul 18, 2024
Merged
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
19 changes: 9 additions & 10 deletions transcripts/470-medicine.txt
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@

00:00:04 those you would rarely classify as developers. On this episode, we get a look inside how Python

00:00:10 is being used at a children's hospital to speed and improve patient care. We have Dr. Somac Roy
00:00:10 is being used at a children's hospital to speed and improve patient care. We have Dr. Somak Roy

00:00:16 here to share how he's using Python in his day to day job to help kids get well a little bit faster.

Expand Down Expand Up @@ -402,7 +402,7 @@

00:21:49 available. More recently, I think we are seeing Rust coming into the picture as well. There's

00:21:54 some Volang applications. And then of course, Python and R are the predominant, I think,
00:21:54 some Golang applications. And then of course, Python and R are the predominant, I think,

00:21:59 tools as the programming language that are used to solve all of these problems.

Expand Down Expand Up @@ -508,7 +508,7 @@

00:26:29 and visualization. So I think the second thing was in terms of the idea that I was working on was

00:26:37 having to develop a web application and all of these bioinformatics, you know, toolings and
00:26:37 having to develop a web application and all of these bioinformatics, you know, tooling and

00:26:42 algorithms running sort of in the back. And so at that time it was like, okay, well, you know,

Expand Down Expand Up @@ -548,7 +548,7 @@

00:28:13 at least right now here, you know, where I am currently working, I have an excellent and amazing

00:28:19 team of developers and bioinformations who really do a lot of the development work on the front end,
00:28:19 team of developers and bioinformation who really do a lot of the development work on the front end,

00:28:25 back end. And so for me to be able to take additional time out of my, you know, the clinical

Expand Down Expand Up @@ -954,7 +954,7 @@

00:47:20 tend to, it's well maintained from an open source perspective. So those obviously are highly,

00:47:24 we highly rely on those. But there is this whole ecosystem of softwares that come under this
00:47:24 we highly rely on those. But there is this whole ecosystem of software's that come under this

00:47:31 rubric term of variant calling, where we're trying to identify these different variants.

Expand Down Expand Up @@ -1076,9 +1076,9 @@

00:53:22 has an internal visualization tool, but I was not very happy with how it was written. So

00:53:29 I ended up writing a wrapper, which is called CNA plotter. It's open source. It essentially
00:53:29 I ended up writing a wrapper, which is called CNAplotr. It's open source. It essentially

00:53:34 uses the end data from CNBKid, and then it gives you a nice visualization of the copy numbers.
00:53:34 uses the end data from CNV Kit, and then it gives you a nice visualization of the copy numbers.

00:53:42 I think if you go down, if you scroll down, there's my example images.

Expand Down Expand Up @@ -1138,7 +1138,7 @@

00:56:00 more than two copies of the bad genes. - One or zero is better. I got it. I got it.

00:56:03 Okay. Okay. HGVS. - Yes. This is, again, a wonderful package that was initially, I think it was started by a person named Vishat. He's, I think he still
00:56:03 Okay. Okay. HGVS. - Yes. This is, again, a wonderful package that was initially, I think it was started by a person named Vishal. He's, I think he still

00:56:16 maintains it, but there's a lot of like, you know, it's a very well publicly maintained

Expand Down Expand Up @@ -1352,7 +1352,7 @@

01:06:15 pipeline. Okay. Yeah. This is new to me. I mean, of course I know Airflow, but not Hera. Cool.

01:06:20 All right. Hi, in Sim, did I grab the right one here?
01:06:20 All right. Hi, InSim, did I grab the right one here?

01:06:26 No, I think it's similar. Let me see if I can, I can send you the link.

Expand Down Expand Up @@ -1641,4 +1641,3 @@
01:18:35 This is your host, Michael Kennedy. Thanks so much for listening. I really appreciate it.

01:18:40 Now get out there and write some Python code.