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We currently have the ability to set quotas for users in the config file via matching glob patterns. This works well primarily in the case for setting per-domain quotas for users rather than specific users. Although we can set glob entries that match specific users, it does not scale well when having to specify quota values for lots of users. Additionally, repo admins who do not have access to the config file cannot programmatically set user quotas.
To address these current quota limitations, I've added support via the admin API the ability to get and set per-user quotas in the MMR database. By default, the config quota globs take precedence unless a user's quota values are specifically set via the admin API.
See admin API docs for further details regarding endpoints added.