Tools for refining language models for the Synthetic Biology (SynBio) domain. Currently, the language models are implimented using transformer-based algorithms.
InferNER contains code to perform inference on Synthetic Biology articles. It currently extracts text that mentions:
- Genes
- Proteins
- Species
- Cell lines
More types of entities will be added to the models as they become available.
To install: pip install -r requirements.txt
To run: python infer.py