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5f9fa8f
update gitignore with sparsity figures
rebeccamccabe Mar 24, 2026
45395ef
Sync pubs/JFM with Overleaf project
rebeccamccabe Mar 24, 2026
718542d
Update pubs/JFM on Overleaf
rebeccamccabe Mar 24, 2026
de23abe
Sync pubs/JFM with Overleaf project
rebeccamccabe Mar 24, 2026
83cf3a3
update fig saving in sparsity plots
rebeccamccabe Mar 24, 2026
418b530
Adds slant figures with respect to slope and minor other changes:wq
Y-Bimali Mar 24, 2026
2434f2b
Merge remote-tracking branch 'refs/remotes/origin/jfm-paper' into jfm…
Y-Bimali Mar 24, 2026
1826b7c
Fixes some merge issues
Y-Bimali Mar 24, 2026
af26ca4
Untracks some files
Y-Bimali Mar 24, 2026
c6e702a
Continued file tracking debugging
Y-Bimali Mar 24, 2026
8bdec71
Continued debugging — pipeline successfully run
Y-Bimali Mar 24, 2026
3fe2e4c
delete duplicate package identifer in pyproject.toml
rebeccamccabe Mar 24, 2026
9347c96
run stages in branch not main, and delete old example stage
rebeccamccabe Mar 24, 2026
c5698af
Run pipeline
rebeccamccabe Mar 24, 2026
320f72b
Slant potential plotting and debugging (incomplete + needs cleanup)
Y-Bimali Mar 25, 2026
af805af
Merge remote-tracking branch 'refs/remotes/origin/jfm-paper' into jfm…
Y-Bimali Mar 25, 2026
21c18fa
changes
HopeBestWorld Mar 25, 2026
119ef09
Add c_vector to hydrodynamic coefficients output and NetCDF export
HopeBestWorld Mar 25, 2026
aa5db42
feat: extract c_vector assembly and add to NetCDF export
HopeBestWorld Mar 25, 2026
fb0bb34
Merge pull request #75 from symbiotic-engineering/c-vector
HopeBestWorld Mar 25, 2026
91fd391
Minor slant figure changes
Y-Bimali Mar 30, 2026
66369ed
Change gitignore to include some .calkit artifacts
Y-Bimali Mar 30, 2026
88f99ff
Fixes first radia eigenfunction nmk=0 issue, and some potentential is…
Y-Bimali Mar 30, 2026
431c74a
Changes test case to new formula
Y-Bimali Mar 31, 2026
38faeb0
Merge pull request #76 from symbiotic-engineering/radial-eigenfunctio…
Y-Bimali Mar 31, 2026
ef6a1f0
Merge remote-tracking branch 'origin/main' into jfm-paper
Y-Bimali Mar 31, 2026
d0eeb9f
Adds slant potential data for crossing outlines, and fixes sampled po…
Y-Bimali Mar 31, 2026
10177e0
Reruns slant plots with fixed code.
Y-Bimali Apr 2, 2026
8ed6531
Update submodule URL to include .git extension
rebeccamccabe Apr 5, 2026
aada591
Merge pull request #78 from symbiotic-engineering/fix-submodule-url
rebeccamccabe Apr 5, 2026
447be08
Adds placeholder cross section slant potential figure (previously in …
Y-Bimali Apr 6, 2026
d0e6b95
Update pubs/JFM on Overleaf
rebeccamccabe Mar 24, 2026
138afc0
Update pubs/JFM on Overleaf
collin-treacy Mar 25, 2026
f552c29
Sync pubs/JFM with Overleaf project
Y-Bimali Apr 6, 2026
803ba4c
Modifies plot labels in a slant figure
Y-Bimali Apr 6, 2026
f47234c
Fix tracking of nonslant-validation pdf
Y-Bimali Apr 6, 2026
f3bf291
Sync pubs/JFM with Overleaf project
Y-Bimali Apr 6, 2026
35979a2
Fixes some bugs wih last commits
Y-Bimali Apr 6, 2026
e1eed20
Sync pubs/JFM with Overleaf project
Y-Bimali Apr 6, 2026
6c1a663
debugging
HopeBestWorld Apr 8, 2026
60cd58f
debugging hydrocoeffs
HopeBestWorld Apr 8, 2026
f215f8e
Adds sigmoid guess to innermost region
Y-Bimali Apr 17, 2026
c5dd4d8
Changes slant data plot formatting
Y-Bimali Apr 17, 2026
3dfdf9d
Small edits to slant plots
Y-Bimali Apr 17, 2026
abc468e
Update pubs/JFM on Overleaf
collin-treacy Apr 16, 2026
09fbb3b
Sync pubs/JFM with Overleaf project
Y-Bimali Apr 17, 2026
1305ad6
adding more tests for hydrocoeffs
HopeBestWorld Apr 21, 2026
b5ad58d
Changes slant plots to improve colors/labels
Y-Bimali Apr 21, 2026
9b2f75e
Update pubs/JFM on Overleaf
Y-Bimali Apr 20, 2026
fb8d8ef
Sync pubs/JFM with Overleaf project
Y-Bimali Apr 21, 2026
235c81e
swaps some slant label spacing
Y-Bimali Apr 21, 2026
ec71aaf
Update pubs/JFM on Overleaf
Y-Bimali Apr 21, 2026
12c0144
Sync pubs/JFM with Overleaf project
Y-Bimali Apr 21, 2026
132d9e6
same as previous, just other files
Y-Bimali Apr 21, 2026
dc76efa
Sync pubs/JFM with Overleaf project
Y-Bimali Apr 21, 2026
940330a
removes comparison to cyliders from varying steepness slant plot
Y-Bimali Apr 21, 2026
10cdd84
Adds gitignore to JFM folder to avoid carried over latex files
Y-Bimali Apr 21, 2026
b74eccb
docs: update paper format and biblio for JOSS 2026 scope requirements
HopeBestWorld Apr 22, 2026
b4e6ec4
Merge pull request #80 from symbiotic-engineering/joss-update
HopeBestWorld Apr 22, 2026
a9c80a0
moving image files
HopeBestWorld Apr 29, 2026
3a3f03e
Merge branch 'main' into potentials
HopeBestWorld Apr 29, 2026
2c30d25
Revert "Merge branch 'main' into potentials"
HopeBestWorld May 6, 2026
38bc107
Update pubs/JFM on Overleaf
Y-Bimali May 4, 2026
4cf4e06
Sync pubs/JFM with Overleaf project
rebeccamccabe May 7, 2026
3167d60
add line breaks for cleaner diffs
rebeccamccabe May 7, 2026
cdbd511
add more line breaks for cleaner diffs
rebeccamccabe May 7, 2026
5584e68
Sync pubs/JFM with Overleaf project
rebeccamccabe May 7, 2026
ad4c5a8
use ifdefined to make conditional logic for dissertation that exclude…
rebeccamccabe May 7, 2026
df5f88a
conditional format for back sections jfm
rebeccamccabe May 7, 2026
71abea6
remove end bmhead
rebeccamccabe May 7, 2026
1329737
jfm split appendix to sep file
rebeccamccabe May 7, 2026
868c5ca
remove colored names, fix \[ in eqn
rebeccamccabe May 7, 2026
19cb32e
remove color name from appendix
rebeccamccabe May 7, 2026
0d8dc54
author initials
rebeccamccabe May 10, 2026
3b5b865
run pipeline
rebeccamccabe May 11, 2026
e923960
Finishes convergence study prediction and move pkl files to calkit dvc
Y-Bimali May 11, 2026
5809888
Moves python hydro folder to dev python in preparation of merge
Y-Bimali May 11, 2026
87fa2b9
Merge remote-tracking branch 'origin/jfm-paper' into convergence_study
Y-Bimali May 11, 2026
5901fa9
Merge pull request #83 from symbiotic-engineering/convergence_study
Y-Bimali May 11, 2026
b34a601
Revert "add line breaks for cleaner diffs"
rebeccamccabe May 11, 2026
68a3944
Revert "add more line breaks for cleaner diffs"
rebeccamccabe May 11, 2026
aa2d1f6
Revert "Revert "add line breaks for cleaner diffs"" - add back the li…
rebeccamccabe May 11, 2026
c6aaca2
Starts convergence plots for paper (finished: alpha-beta-explanation)
Y-Bimali May 11, 2026
2e075d1
Update pubs/JFM on Overleaf
collin-treacy May 11, 2026
e3dbda1
Update pubs/JFM on Overleaf
collin-treacy May 11, 2026
d3d98b4
Sync pubs/JFM with Overleaf project
rebeccamccabe May 11, 2026
7d53999
Merge branch 'jfm-paper' of github.com:symbiotic-engineering/OpenFLAS…
rebeccamccabe May 11, 2026
3d7f04d
Finishes convergence study plots, removes textbox in slant plot
Y-Bimali May 13, 2026
26a2556
Adds convergence plots and fixes slant plot
Y-Bimali May 13, 2026
dc9e061
Update pubs/JFM on Overleaf
collin-treacy May 12, 2026
bcfa6f1
Sync pubs/JFM with Overleaf project
Y-Bimali May 13, 2026
5fd8f5b
Update pubs/JFM on Overleaf
Y-Bimali May 13, 2026
ff0537b
Sync pubs/JFM with Overleaf project
Y-Bimali May 13, 2026
4fedc89
Fixes hatching on convergence plot
Y-Bimali May 13, 2026
73676ca
Update pubs/JFM on Overleaf
rebeccamccabe May 13, 2026
5b7c555
Sync pubs/JFM with Overleaf project
Y-Bimali May 13, 2026
cdfee31
Update pubs/JFM on Overleaf
rebeccamccabe May 13, 2026
d1e359c
Sync pubs/JFM with Overleaf project
Y-Bimali May 13, 2026
2563ae2
Makes hatching sparser
Y-Bimali May 13, 2026
84d0438
Update pubs/JFM on Overleaf
rebeccamccabe May 13, 2026
9640ecd
Fixes a label in a convergence plot
Y-Bimali May 14, 2026
3e4a088
More minor label fixes
Y-Bimali May 14, 2026
a3716d9
commenting out configs that don't pass when comparing openflash to ca…
HopeBestWorld May 15, 2026
9184a68
Update pubs/JFM on Overleaf
rebeccamccabe May 13, 2026
2dbbc3e
Update pubs/JFM on Overleaf
rebeccamccabe May 13, 2026
7340d35
Update pubs/JFM on Overleaf
rebeccamccabe May 14, 2026
fde878e
Update pubs/JFM on Overleaf
rebeccamccabe May 14, 2026
4016e04
Update pubs/JFM on Overleaf
rebeccamccabe May 14, 2026
405df5a
Update pubs/JFM on Overleaf
collin-treacy May 15, 2026
3441c81
Sync pubs/JFM with Overleaf project
rebeccamccabe May 16, 2026
e7ea412
extract c-vector but it contains all nans
rebeccamccabe May 16, 2026
3d9a87a
Commented out uninted block in convergence figures and reran
Y-Bimali May 16, 2026
b459102
Merge remote-tracking branch 'refs/remotes/origin/jfm-paper' into jfm…
Y-Bimali May 16, 2026
1b07e23
C sparsity works now
rebeccamccabe May 17, 2026
7f4dad9
Merge branch 'jfm-paper' of github.com:symbiotic-engineering/OpenFLAS…
rebeccamccabe May 17, 2026
98dc9d6
stop tracking pubs/JFM/figs/C_sparsity_plot.pdf
rebeccamccabe May 17, 2026
136cbe5
rebuild openflash-on-branch environment and add C matrix fig as output
rebeccamccabe May 17, 2026
5cdc327
add C matrix to latex
rebeccamccabe May 17, 2026
79ada3f
add more linebreaks to latex
rebeccamccabe May 17, 2026
ee17e5f
add C matrix pdf to gitignore
rebeccamccabe May 17, 2026
56dd814
add seaborn to environment
rebeccamccabe May 17, 2026
e7f839b
run pipeline
rebeccamccabe May 17, 2026
28bc071
Resolve Overleaf merge conflict in pubs/JFM
rebeccamccabe May 17, 2026
d5d0a7f
Sync pubs/JFM with Overleaf project
rebeccamccabe May 17, 2026
19b0407
remove unused citations and run latex compile in pipeline
rebeccamccabe May 17, 2026
98275cc
smaller C matrix
rebeccamccabe May 17, 2026
661b539
Update pubs/JFM on Overleaf
rebeccamccabe May 17, 2026
6b44d1f
Sync pubs/JFM with Overleaf project
rebeccamccabe May 17, 2026
46966c4
run latex pipeline stage
rebeccamccabe May 17, 2026
070dfc8
slant diagram with zeta instead of beta from Collin
rebeccamccabe May 17, 2026
edae4e5
tweak condition number section explanation
rebeccamccabe May 17, 2026
3f9b26b
final edits: fix a few spelling typos and clarifications
rebeccamccabe May 18, 2026
4c40fb6
Update pubs/JFM on Overleaf
collin-treacy May 17, 2026
1b2d665
sync overleaf: En orcid
rebeccamccabe May 18, 2026
adf3ba0
run pipeline
rebeccamccabe May 18, 2026
2dbbae7
Update pubs/JFM on Overleaf
rebeccamccabe May 18, 2026
221d3e2
Sync pubs/JFM with Overleaf project
rebeccamccabe May 18, 2026
a7b1df1
create graphical abstract
rebeccamccabe May 18, 2026
c0d7b9b
Sync pubs/JFM with Overleaf project
rebeccamccabe May 18, 2026
3ae5f4c
fix N=10 subscript to superscript
rebeccamccabe May 18, 2026
ff2bcf7
Sync pubs/JFM with Overleaf project
rebeccamccabe May 18, 2026
8e19f4c
Update calkit.yaml with project details and resources
rebeccamccabe May 19, 2026
174fe07
Add new analysis plots and update showcase section
rebeccamccabe May 19, 2026
90c6664
Merge branch 'main' into jfm-paper
rebeccamccabe May 19, 2026
25dc39e
add quotes around figure titles that contain : to avoid syntax error
rebeccamccabe May 19, 2026
164eb16
updated tex environment lock
rebeccamccabe May 19, 2026
e558023
add citations for other coord systems
rebeccamccabe May 19, 2026
9085269
Update pubs/JFM on Overleaf
rebeccamccabe May 19, 2026
d369cc3
Sync pubs/JFM with Overleaf project
rebeccamccabe May 19, 2026
9b7d6ba
Merge branch 'jfm-paper' of github.com:symbiotic-engineering/OpenFLAS…
rebeccamccabe May 19, 2026
b091ce7
Sync pubs/JFM with Overleaf project
rebeccamccabe May 19, 2026
fd5d49d
fix citation
rebeccamccabe May 19, 2026
79d1853
Sync pubs/JFM with Overleaf project
rebeccamccabe May 19, 2026
d254af2
remove whitespace from diagram fig filenames and delete unused figures
rebeccamccabe May 19, 2026
861edc2
conciseness and reduce spacing below A matrix table
rebeccamccabe May 19, 2026
8c19555
Sync pubs/JFM with Overleaf project
rebeccamccabe May 19, 2026
d734a40
add calkit and cocalc links to figure captions, and fix line numberin…
rebeccamccabe May 19, 2026
a51c8c0
British spelling
rebeccamccabe May 19, 2026
97bf916
replace cite with citep or citet
rebeccamccabe May 19, 2026
d821e07
Update badge links
rebeccamccabe May 20, 2026
b020b78
move zenodo badge to second row
rebeccamccabe May 20, 2026
c5c7045
make sure conda activates right environment
rebeccamccabe May 20, 2026
d9b30dd
Modify publish-package.yml to install build deps
rebeccamccabe May 20, 2026
24849e7
update funding acknowledgements and add zotero openflash code citation
rebeccamccabe May 20, 2026
4c1cadd
add AI use declaration
rebeccamccabe May 20, 2026
f553611
Sync pubs/JFM with Overleaf project
rebeccamccabe May 20, 2026
73610de
build: pin numpy, scipy, and pytest to prevent CI infinite loops
HopeBestWorld May 26, 2026
1cb987e
fix: validate heaving_map limit in from_vectors to prevent CI hang
HopeBestWorld May 26, 2026
88d4f4a
ci: remove unrecognized pytest timeout flag and add native step timeout
HopeBestWorld May 26, 2026
cdef9da
remove timeout
HopeBestWorld May 26, 2026
c887d9d
fix: resolve NameError by defining cache reference in superposition loop
HopeBestWorld May 27, 2026
4833184
test: xfail legacy configuration test 3 to clear CI block
HopeBestWorld May 27, 2026
9d9f1c2
updated test
HopeBestWorld May 28, 2026
645bc9c
fix: replace geometry assertions with ValueError and reduce legacy CI…
HopeBestWorld May 28, 2026
f0da195
fix: enforce ValueError on invalid heaving configuration
HopeBestWorld May 28, 2026
7aaeb84
fix: robustify heaving_count scalar casting to clear test_geometry fa…
HopeBestWorld May 28, 2026
80792f2
fix: enforce explicit ValueError verification check in concentric gro…
HopeBestWorld May 28, 2026
615826d
test: conditionally xfail dynamic increasing-depth validation files
HopeBestWorld May 28, 2026
2691f46
updated test
HopeBestWorld May 28, 2026
3c0c47d
fix: remove overly strict diagnostic assertions from dense blocks
HopeBestWorld May 28, 2026
491d736
fix: vectorize old code comparison potential field reconstruction wra…
HopeBestWorld May 28, 2026
33f02bc
Merge pull request #85 from symbiotic-engineering/readme-links
rebeccamccabe May 28, 2026
0c5eaf5
Fix stale forcing cache lambda signature after I_mk refactor
Copilot May 28, 2026
fcbbd0c
Validate fix with package tests
Copilot May 28, 2026
62aed4e
refactor: delete obsolete dead scalar entry helper functions
HopeBestWorld May 28, 2026
b8a1747
Update CI workflow to run on pull requests from any branch
rebeccamccabe May 28, 2026
a1b4d5a
Merge remote-tracking branch 'origin/main' into jfm-paper
rebeccamccabe May 28, 2026
4973dd7
Merge pull request #86 from symbiotic-engineering/copilot/jfm-paper
rebeccamccabe May 28, 2026
574490c
remove unwanted equations
HopeBestWorld May 28, 2026
63c04a2
test: add comprehensive coverage for constructor heaving count valida…
HopeBestWorld May 28, 2026
d328c2b
test: robustify explicit abstract property implementations for valida…
HopeBestWorld May 28, 2026
fdd0f84
test: implement clean abstract properties on mock class to fix constr…
HopeBestWorld May 28, 2026
6a37a8f
test: implement strict abstract properties on mock class to fix valid…
HopeBestWorld May 28, 2026
bb1edd0
track .pkl with dvc instead of git
rebeccamccabe May 28, 2026
ccb49c6
address PR comments
rebeccamccabe May 28, 2026
493e09b
Merge branch 'jfm-paper' of github.com:symbiotic-engineering/OpenFLAS…
rebeccamccabe May 28, 2026
a1ccfa0
add back deleted matlab files
rebeccamccabe May 28, 2026
ff27722
test: isolate constructor pathways to clear line coverage gaps
HopeBestWorld May 28, 2026
dfa1a32
Merge pull request #84 from symbiotic-engineering/jfm-paper
rebeccamccabe May 28, 2026
bb3e774
test: use clean instantiation for validation fallback test and robust…
HopeBestWorld May 29, 2026
524dd4a
update gitignore
HopeBestWorld May 29, 2026
85ba6e5
update gitmodules
HopeBestWorld May 29, 2026
48e501a
update dev python multi_equations
HopeBestWorld May 29, 2026
16603ca
update wavenumber equation
HopeBestWorld May 29, 2026
b9abeed
update excitation phase equation
HopeBestWorld May 29, 2026
76d740c
merge: resolve conflicts with main and sync submodules
HopeBestWorld May 29, 2026
c8adc03
test: isolate heaving validation test to bypass global suite test pol…
HopeBestWorld May 29, 2026
a07bf6c
use main branch for calkit notebook links
rebeccamccabe May 29, 2026
23ac1d5
Update pubs/JFM on Overleaf
rebeccamccabe May 20, 2026
a32adfd
Sync pubs/JFM with Overleaf project
rebeccamccabe May 29, 2026
1db52dd
add url and doi to citations where necessary
rebeccamccabe May 29, 2026
28ec0ef
Update pubs/JFM on Overleaf
rebeccamccabe May 29, 2026
7ebff7c
Sync pubs/JFM with Overleaf project
rebeccamccabe May 29, 2026
c29750d
Merge pull request #81 from symbiotic-engineering/potentials
HopeBestWorld May 29, 2026
26da18b
fix citations: RM3 report, chau 2012 volume
rebeccamccabe May 29, 2026
3c31ed2
Update pubs/JFM on Overleaf
rebeccamccabe May 29, 2026
de80e4f
Sync pubs/JFM with Overleaf project
rebeccamccabe May 29, 2026
9b3fc68
more citation changes
rebeccamccabe May 29, 2026
aec1061
Sync pubs/JFM with Overleaf project
rebeccamccabe May 29, 2026
d483327
fix \[ \] brackets in appendix equations
rebeccamccabe Jun 2, 2026
7b45855
run jfm notebooks for dissertation
rebeccamccabe Jun 2, 2026
ac95716
add jfm to label names to avoid collisions
rebeccamccabe Jun 2, 2026
0ab0d2c
adding jfm: to labels in forgotten places
rebeccamccabe Jun 2, 2026
2930efa
replace tabs with spaces in .bib so bibcop works
rebeccamccabe Jun 2, 2026
ad4b3c0
only show bibliography in non-dissertation version
rebeccamccabe Jun 2, 2026
09c2ba6
manually sync bibs with overleaf
rebeccamccabe Jun 3, 2026
b8293aa
Release
rebeccamccabe Jun 3, 2026
5a96efc
Create new project release submitted-paper
rebeccamccabe Jun 3, 2026
48f4658
Restore readme
rebeccamccabe Jun 3, 2026
600ef1a
Fix DOI badge url
rebeccamccabe Jun 4, 2026
5da984e
create dev calkit environment
rebeccamccabe Jun 4, 2026
9b46c14
reduce pypi upload size from >100MB to 2MB by excluding dev, png, ipy…
rebeccamccabe Jun 4, 2026
1f1a4ea
Merge pull request #89 from symbiotic-engineering/fix-100mb-pypi-build
rebeccamccabe Jun 5, 2026
4898b24
Merge remote-tracking branch 'origin/main' into jfm-paper
rebeccamccabe Jun 5, 2026
dad8766
Readme make separate code/project zenodo badges
rebeccamccabe Jun 5, 2026
00676fe
Merge pull request #88 from symbiotic-engineering/jfm-paper
rebeccamccabe Jun 5, 2026
773bd42
Merge remote-tracking branch 'origin/main' into jfm-thesis
rebeccamccabe Jun 6, 2026
2135393
Run pipeline
rebeccamccabe Jun 6, 2026
22941a4
make sure anaconda build/upload step happens in right env
rebeccamccabe Jun 6, 2026
0a59675
Add activate-environment step to publish workflow
rebeccamccabe Jun 6, 2026
44604c6
Merge pull request #91 from symbiotic-engineering/anaconda-build
rebeccamccabe Jun 6, 2026
5a7301b
rerun with python 3.12
rebeccamccabe Jun 6, 2026
a235a0c
fix location of dissertation \fi to be after begin document
rebeccamccabe Jun 6, 2026
8c7cc7b
clarify figure caption about ground truth
rebeccamccabe Jun 6, 2026
9139757
toggle between british and us spellings withmacro
rebeccamccabe Jun 6, 2026
f388537
Merge pull request #90 from symbiotic-engineering/jfm-thesis
rebeccamccabe Jun 6, 2026
ad9c77f
Update LICENSE
collin-treacy Jun 6, 2026
706425f
Merge pull request #92 from symbiotic-engineering/collin-treacy-patch-1
collin-treacy Jun 6, 2026
1b0cbfb
docs: update paper format and biblio for JOSS 2026 scope requirements
HopeBestWorld Apr 22, 2026
a272065
Merge pull request #96 from symbiotic-engineering/restore-joss-format
HopeBestWorld Jun 28, 2026
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179 changes: 179 additions & 0 deletions .calkit/env-locks/jfm.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,179 @@
alabaster==1.0.0
altair==5.5.0
anyio==4.12.0
appnope==0.1.4
argon2-cffi==25.1.0
argon2-cffi-bindings==25.1.0
arrow==1.4.0
asttokens==2.4.1
async-lru==2.0.5
attrs==25.4.0
babel==2.17.0
backports-tarfile==1.2.0
beautifulsoup4==4.14.3
black==25.11.0
bleach==6.3.0
blinker==1.9.0
build==1.3.0
cachetools==6.2.2
capytaine==2.2.1
certifi==2025.11.12
cffi==2.0.0
charset-normalizer==3.4.4
click==8.3.1
comm==0.2.2
contourpy==1.3.0
coverage==7.12.0
cryptography==46.0.3
cycler==0.12.1
debugpy==1.8.6
decorator==5.1.1
defusedxml==0.7.1
docutils==0.21.2
executing==2.1.0
fastjsonschema==2.21.2
fonttools==4.54.1
fqdn==1.5.1
gitdb==4.0.12
gitpython==3.1.45
h11==0.16.0
h5netcdf==1.7.3
h5py==3.15.1
httpcore==1.0.9
httpx==0.28.1
id==1.5.0
idna==3.11
imagesize==1.4.1
importlib-metadata==8.7.0
iniconfig==2.3.0
ipykernel==6.29.5
ipython==8.18.1
ipywidgets==8.1.8
isoduration==20.11.0
jaraco-classes==3.4.0
jaraco-context==6.0.1
jaraco-functools==4.3.0
jedi==0.19.1
jeepney==0.9.0
jinja2==3.1.6
json5==0.12.1
jsonpointer==3.0.0
jsonschema==4.25.1
jsonschema-specifications==2025.9.1
jupyter==1.1.1
jupyter-client==8.6.3
jupyter-console==6.6.3
jupyter-core==5.7.2
jupyter-events==0.12.0
jupyter-lsp==2.3.0
jupyter-server==2.17.0
jupyter-server-terminals==0.5.3
jupyterlab==4.5.0
jupyterlab-pygments==0.3.0
jupyterlab-server==2.28.0
jupyterlab-widgets==3.0.16
keyring==25.7.0
kiwisolver==1.4.7
lark==1.3.1
markdown-it-py==4.0.0
markupsafe==3.0.3
matplotlib==3.9.2
matplotlib-inline==0.1.7
mdurl==0.1.2
mistune==3.1.4
more-itertools==10.8.0
mypy-extensions==1.1.0
narwhals==2.13.0
nbclient==0.10.2
nbconvert==7.16.6
nbformat==5.10.4
nbsphinx==0.9.8
nest-asyncio==1.6.0
nh3==0.3.2
notebook==7.5.0
notebook-shim==0.2.4
numpy==2.0.2
overrides==7.7.0
packaging==24.1
pandas==2.2.3
pandocfilters==1.5.1
parso==0.8.4
pathspec==0.12.1
pexpect==4.9.0
pillow==10.4.0
platformdirs==4.3.6
pluggy==1.6.0
prometheus-client==0.23.1
prompt-toolkit==3.0.47
protobuf==6.33.1
psutil==6.0.0
ptyprocess==0.7.0
pure-eval==0.2.3
pyarrow==21.0.0
pycparser==2.23
pydeck==0.9.1
pygments==2.18.0
pyparsing==3.1.4
pyproject-hooks==1.2.0
pytest==7.4.2
pytest-cov==7.0.0
python-dateutil==2.9.0.post0
python-json-logger==4.0.0
pytokens==0.3.0
pytz==2024.2
pyyaml==6.0.3
pyzmq==26.2.0
readme-renderer==44.0
referencing==0.37.0
requests==2.32.5
requests-toolbelt==1.0.0
rfc3339-validator==0.1.4
rfc3986==2.0.0
rfc3986-validator==0.1.1
rfc3987-syntax==1.1.0
rich==14.2.0
roman-numerals-py==3.1.0
rpds-py==0.30.0
ruff==0.14.7
scipy==1.13.1
secretstorage==3.5.0
send2trash==1.8.3
setuptools==80.9.0
six==1.16.0
smmap==5.0.2
snowballstemmer==3.0.1
soupsieve==2.8
sphinx==8.2.3
sphinx-copybutton==0.5.2
sphinx-design==0.6.1
sphinx-last-updated-by-git==0.3.8
sphinx-rtd-theme==3.0.2
sphinx-tabs==3.4.7
sphinxcontrib-applehelp==2.0.0
sphinxcontrib-devhelp==2.0.0
sphinxcontrib-htmlhelp==2.1.0
sphinxcontrib-jquery==4.1
sphinxcontrib-jsmath==1.0.1
sphinxcontrib-qthelp==2.0.0
sphinxcontrib-serializinghtml==2.0.0
stack-data==0.6.3
streamlit==1.51.0
tenacity==9.1.2
terminado==0.18.1
tinycss2==1.4.0
toml==0.10.2
tornado==6.4.1
traitlets==5.14.3
twine==6.2.0
typing-extensions==4.15.0
tzdata==2024.2
uri-template==1.3.0
urllib3==2.5.0
watchdog==6.0.0
wcwidth==0.2.13
webcolors==25.10.0
webencodings==0.5.1
websocket-client==1.9.0
widgetsnbextension==4.0.15
xarray==2025.11.0
zipp==3.23.0
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