Pinned Loading
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CellRanger-Pipeline
CellRanger-Pipeline PublicThis script automates the process of downloading SRA files, converting them to FASTQ format, and running the Cell Ranger count pipeline for RNA-seq analysis. It processes multiple samples concurren…
Shell
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Velocyto-Processing-Workflow
Velocyto-Processing-Workflow PublicThis repository contains two scripts used for processing single-cell RNA sequencing data with Velocyto
Shell
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FASTA-File-statistics
FASTA-File-statistics Publicthis code reads a potentially compressed FASTA file, counts the sequences and residues, and writes this statistical information to a text file for analysis or record-keeping
Jupyter Notebook
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Genome-Alignment-Comparison
Genome-Alignment-Comparison PublicComparative Analysis of Alignment Tools on Diverse Genomic Data: Bowtie2, BWA, Minimap
Python
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SLE_B_Cell_Gene_Expression
SLE_B_Cell_Gene_Expression PublicThis project explores gene expression data in R to compare peripheral B lymphocytes from Systemic Lupus Erythematosus (SLE) patients and healthy controls, providing insights into gene expression di…
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Pinned Loading
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CellRanger-Pipeline
CellRanger-Pipeline PublicThis script automates the process of downloading SRA files, converting them to FASTQ format, and running the Cell Ranger count pipeline for RNA-seq analysis. It processes multiple samples concurren…
Shell
-
Velocyto-Processing-Workflow
Velocyto-Processing-Workflow PublicThis repository contains two scripts used for processing single-cell RNA sequencing data with Velocyto
Shell
-
FASTA-File-statistics
FASTA-File-statistics Publicthis code reads a potentially compressed FASTA file, counts the sequences and residues, and writes this statistical information to a text file for analysis or record-keeping
Jupyter Notebook
-
Genome-Alignment-Comparison
Genome-Alignment-Comparison PublicComparative Analysis of Alignment Tools on Diverse Genomic Data: Bowtie2, BWA, Minimap
Python
-
SLE_B_Cell_Gene_Expression
SLE_B_Cell_Gene_Expression PublicThis project explores gene expression data in R to compare peripheral B lymphocytes from Systemic Lupus Erythematosus (SLE) patients and healthy controls, providing insights into gene expression di…
-
Pinned Loading
-
CellRanger-Pipeline
CellRanger-Pipeline PublicThis script automates the process of downloading SRA files, converting them to FASTQ format, and running the Cell Ranger count pipeline for RNA-seq analysis. It processes multiple samples concurren…
Shell
-
Velocyto-Processing-Workflow
Velocyto-Processing-Workflow PublicThis repository contains two scripts used for processing single-cell RNA sequencing data with Velocyto
Shell
-
FASTA-File-statistics
FASTA-File-statistics Publicthis code reads a potentially compressed FASTA file, counts the sequences and residues, and writes this statistical information to a text file for analysis or record-keeping
Jupyter Notebook
-
Genome-Alignment-Comparison
Genome-Alignment-Comparison PublicComparative Analysis of Alignment Tools on Diverse Genomic Data: Bowtie2, BWA, Minimap
Python
-
SLE_B_Cell_Gene_Expression
SLE_B_Cell_Gene_Expression PublicThis project explores gene expression data in R to compare peripheral B lymphocytes from Systemic Lupus Erythematosus (SLE) patients and healthy controls, providing insights into gene expression di…
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