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Commits on Dec 9, 2024

• solve conflicts

  suzannejin

  committed
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Commits on Nov 6, 2024

• Merge pull request nf-core#332 from davidecarlson/master

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  davidecarlson

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Commits on Nov 4, 2024

• Update nextflow_schema.json

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  davidecarlson

  and

  WackerO

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  acdcfed

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Commits on Oct 29, 2024

• add additional reference to wiki article for MAD

  davidecarlson

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Commits on Oct 25, 2024

• Update nextflow_schema.json

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  KamilMaliszArdigen

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  pinin4fjords

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Commits on Oct 24, 2024

• schema correction

  KamilMaliszArdigen

  committed
  763e219

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• Merge branch 'dev' into add_limma_for_rnaseq

  KamilMaliszArdigen

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  fb8fd0f

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• Limma module update with adjustments for rnaseq data

  KamilMaliszArdigen

  committed
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Commits on Oct 23, 2024

• Removed TXT options from nextflow schema except for proteinGroups.txt

  WackerO

  committed
  d37e870

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Commits on Oct 18, 2024

• modify propd.R so that it output some plots for the top red/yellow/green pairs

  suzannejin

  committed
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Commits on Oct 17, 2024

• add parameter for propd_weighted_degree

  suzannejin

  committed
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Commits on Oct 16, 2024

• updated fromSamplesheet to samplesheetToList

  suzannejin

  committed
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Commits on Oct 14, 2024

• Merge branch 'dev' into dev-ratio

  pinin4fjords

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Commits on Oct 11, 2024

• Merge branch 'TEMPLATE' of github.com:nf-core/differentialabundance into merging-template-updates

  pinin4fjords

  committed
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• Template update for nf-core/tools version 3.0.1

  nf-core-bot

  committed
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Commits on Oct 8, 2024

• Template update for nf-core/tools version 3.0.0

  nf-core-bot

  committed
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Commits on Sep 6, 2024

• Add CoDA/experimental branch to CI tests

  

  bjlang

  committed
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Commits on Sep 3, 2024

• updated nextflow_schema.json

  KamilMaliszArdigen

  committed
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Commits on Aug 27, 2024

• Merge branch 'nf-core:dev-ratio' into dev-ratio

  bjlang

  authored
  718075b

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• Merge pull request nf-core#284 from nf-core/dev

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  bjlang

  authored
  5e5c6e4

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• Move main_coda logic into differentialabundance as experimental study type

  

  bjlang

  committed
  05cfb3a

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Commits on Jul 26, 2024

• small fixes to allow main_coda.nf to run

  

  bjlang

  committed
  e3fde5b

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Commits on Jul 3, 2024

• Lima integration wip

  KamilMaliszArdigen

  committed
  db4e959

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Commits on Jun 28, 2024

• Updated new param to follow convention

  KamilMaliszArdigen

  committed
  99142bd

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• Updated nextflow schema and limma selection logic

  KamilMaliszArdigen

  committed
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Commits on Jun 25, 2024

• Wire in new shinyngs log options, remove deprecated guessing option

  pinin4fjords

  committed
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Commits on May 22, 2024

• Merge branch 'TEMPLATE' of https://github.com/nf-core/differentialabundance into template_up2_14_1

  WackerO

  committed
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Commits on May 8, 2024

• Template update for nf-core/tools version 2.14.0

  nf-core-bot

  committed
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Commits on Apr 30, 2024

• log2 assays are not a features thing

  pinin4fjords

  committed
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Commits on Apr 19, 2024

• Fixed filter_difftable module not properly filtering (had to switch to python); undid the changes to the docs/defaults for --proteus_measurecol_prefix regarding the final space

  WackerO

  committed
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Commits on Mar 27, 2024

• more linting; fails locally despite same paths as in airrflow, but maybe it works online?

  WackerO

  committed
  c6a8353

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• Bugfix in proteus_measurecol_prefix parameter with final whitespace

  WackerO

  committed
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Commits on Mar 22, 2024

• added description of observations_name_col default

  WackerO

  committed
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Commits on Mar 21, 2024

• removed advanced options key from schema, re-added example of observations_name_col

  WackerO

  committed
  82cba18

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• Returned advanced options to their sections, removed default for observations_name_col

  WackerO

  committed
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