Commits

Breadcrumbs

History for

on99142bd

User selector

All users

Datepicker

All time

Commit History

Commits on Jun 28, 2024

• Updated new param to follow convention

  KamilMaliszArdigen

  committed
  99142bd

  Copy full SHA for 99142bd

• Updated nextflow schema and limma selection logic

  KamilMaliszArdigen

  committed
  306f6de

  Copy full SHA for 306f6de

Commits on Apr 30, 2024

• log2 assays are not a features thing

  pinin4fjords

  committed
  ad437d1

  Copy full SHA for ad437d1

Commits on Apr 19, 2024

• Fixed filter_difftable module not properly filtering (had to switch to python); undid the changes to the docs/defaults for --proteus_measurecol_prefix regarding the final space

  WackerO

  committed
  cab1c01

  Copy full SHA for cab1c01

Commits on Mar 27, 2024

• more linting; fails locally despite same paths as in airrflow, but maybe it works online?

  WackerO

  committed
  c6a8353

  Copy full SHA for c6a8353

• Bugfix in proteus_measurecol_prefix parameter with final whitespace

  WackerO

  committed
  6520455

  Copy full SHA for 6520455

Commits on Mar 22, 2024

• added description of observations_name_col default

  WackerO

  committed
  0854d3f

  Copy full SHA for 0854d3f

Commits on Mar 21, 2024

• removed advanced options key from schema, re-added example of observations_name_col

  WackerO

  committed
  82cba18

  Copy full SHA for 82cba18

• Returned advanced options to their sections, removed default for observations_name_col

  WackerO

  committed
  1f15666

  Copy full SHA for 1f15666

Commits on Mar 20, 2024

• linting

  WackerO

  committed
  5c08b3b

  Copy full SHA for 5c08b3b

• Moved differential_file_suffix and exploratory_assay_names to advanced options, made suffix an optional param2

  WackerO

  committed
  65550c5

  Copy full SHA for 65550c5

Commits on Mar 19, 2024

• Added QBiC credits, made observations_name_col optional on modules.config, changed features_id/name_col helptext

  WackerO

  committed
  adbc14f

  Copy full SHA for adbc14f

Commits on Feb 27, 2024

• Belatedly added NA options for matrixfilter to the pipeline

  WackerO

  committed
  d8ade86

  Copy full SHA for d8ade86

Commits on Jan 31, 2024

• Fix linting

  WackerO

  committed
  0d234af

  Copy full SHA for 0d234af

Commits on Jan 23, 2024

• Changed contributor info from file to string param, simplified CSS and RMD code

  WackerO

  committed
  4b1ff42

  Copy full SHA for 4b1ff42

Commits on Jan 16, 2024

• Linting, bugfixes

  WackerO

  committed
  58b1394

  Copy full SHA for 58b1394

• Merge branch 'dev' of https://github.com/nf-core/differentialabundance into project_info

  WackerO

  committed
  745800b

  Copy full SHA for 745800b

• Changed report contact info to a single param and added CSS for styling; updated docs

  WackerO

  committed
  9d1d609

  Copy full SHA for 9d1d609

Commits on Dec 19, 2023

• removed gprofiler mode

  WackerO

  committed
  b2af649

  Copy full SHA for b2af649

Commits on Dec 18, 2023

• Added param for selectively running gprofiler2 without GMT

  WackerO

  committed
  05e98ba

  Copy full SHA for 05e98ba

Commits on Dec 13, 2023

• adapted gprofiler2 report section to gsea, changed order of docu, added gprofiler and gsea in parallel to test_full, removed gprofiler from test, made gprofiler use a background by default

  WackerO

  committed
  c7c55ca

  Copy full SHA for c7c55ca

Commits on Dec 8, 2023

• Param renames, adapted workflow to do the correct checks; fixed a bug in the gprofiler2 module. It is now the same as that in my nf-core/modules PR but I still need to 'officially' install the upda…

  Show description for a1fcc1c
  WackerO

  committed
  a1fcc1c

  Copy full SHA for a1fcc1c

• added difftable filtering module, added short docu section for gsea, renamed params

  WackerO

  committed
  8519c11

  Copy full SHA for 8519c11

Commits on Dec 5, 2023

• Fixed some old params

  WackerO

  committed
  5250c22

  Copy full SHA for 5250c22

• Combined gprofiler with gsea section in report results; added short gsea docu; replaced gsea with gprofiler in test config (gsea is still tested in test_affy); moved round_digits and gene_sets to n…

  Show description for 04c9084
  WackerO

  committed
  04c9084

  Copy full SHA for 04c9084

Commits on Nov 30, 2023

• fixed schema, added icons to proteus and gprofiler2

  WackerO

  committed
  ced9196

  Copy full SHA for ced9196

• Merge branch 'dev' of https://github.com/nf-core/differentialabundance into add_gpro

  WackerO

  committed
  57f83b8

  Copy full SHA for 57f83b8

Commits on Nov 27, 2023

• Address @mashehu feedback for release

  pinin4fjords

  committed
  56853f5

  Copy full SHA for 56853f5

• Corrected metro maps, uncommented error case in workflow, fixed spelling error in schema, added rds to GOST output

  WackerO

  committed
  68695b7

  Copy full SHA for 68695b7

• Merge branch 'dev' of https://github.com/nf-core/differentialabundance into add_gpro

  WackerO

  committed
  786ec25

  Copy full SHA for 786ec25

Commits on Nov 22, 2023

• Schema fix

  pinin4fjords

  committed
  9bf5396

  Copy full SHA for 9bf5396

• Plumb in the new gene length matrices

  pinin4fjords

  committed
  4299142

  Copy full SHA for 4299142

Commits on Nov 16, 2023

• Merge branch 'dev' of https://github.com/nf-core/differentialabundance into add_gpro

  WackerO

  committed
  454c23c

  Copy full SHA for 454c23c

Commits on Nov 14, 2023

• Added PI and contact params for report; added newline between report author and workflow version

  WackerO

  committed
  8ae788f

  Copy full SHA for 8ae788f

Commits on Nov 13, 2023

• Merge branch 'dev' of https://github.com/nf-core/differentialabundance into allgenes

  WackerO

  committed
  9a11027

  Copy full SHA for 9a11027

Pagination

Previous

Next