We are trying to develop a pipeline to map piggybac insertion sites in the genome. This pipeline is based on Bowtie2, fastx-toolbox.
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Tian Xu's lab: http://medicine.yale.edu/lab/xu/research/
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Addgene Blog: http://blog.addgene.org/piggybac-ing-through-the-genome-editing-field
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piggyBac Companies: https://www.systembio.com/products/gene-expression-systems/piggybac-transposon/