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Workflow file for this run

name: Tests (install w/ pinned env)
on:
push:
branches: [ master ]
pull_request:
branches: [ master ]
jobs:
build:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Install micromamba
uses: mamba-org/provision-with-micromamba@main
with:
environment-file: salmon.lock.yml
- name: Debug info
shell: bash -l {0}
run: |
echo " which {python, pip, pytest}"
which python
which pip
echo " sudo dollar sigh which {python, pip, pytest}"
sudo echo $(which python)
sudo echo $(which pip)
sudo echo $(which pytest)
echo " sudo which {python, pip, pytest}"
sudo which python
sudo which pip
echo " Running pwd..."
pwd
echo " Running echo $USER..."
echo $USER
echo " Running chown..."
sudo chown -R -H -L $USER:$USER /home/runner/work/salmon/
chown -R -H -L $USER:$USER /home/runner/work/salmon/
echo " Running chmod..."
sudo chmod -R 777 /home/runner/work/salmon/
echo " Running `ls`..."
ls
- name: Prepare for docker build...
shell: bash -l {0}
run: |
chmod +x launch.sh
# chown -R -H -L $USER:$USER .
sudo chown -R -H -L $USER:$USER .
sudo chown -R -H -L $USER:$USER salmon docs tests
- name: Install Salmon
shell: bash -l {0}
run: |
sudo $(which pip) install .
sudo $(which pip) install pytest
- name: Run tests in salmon/salmon/
shell: bash -l {0}
run: |
sudo $(which pytest) salmon/
- uses: docker/setup-buildx-action@v1
with:
driver: docker
- name: Build Salmon server w/ Docker
env:
SALMON_NO_AUTH: 1
run: |
sudo --preserve-env=SALMON_NO_AUTH docker-compose up &
until curl 127.0.0.1:8421 > /dev/null 2>&1; do :; done # wait for container to start
sudo docker ps
- name: Run all tests
shell: bash -l {0}
run: |
# sudo docker-compose logs -f & # if debugging; shows logs
sudo $(which pytest)