added Cosimos slides and added pandas import for plotting python

stschiff · Jan 24, 2019 · ec33352 · ec33352
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diff --git a/contents/07_qpgraph/qpGraph.rst b/contents/07_qpgraph/qpGraph.rst
@@ -1,3 +1,5 @@
+Slides for this lesson are available :download:`here <./qpGraph_Posth.pdf>`.
+
 Estimating Admixture Graphs with ``qpGraph``
 ============================================
 

diff --git a/contents/07_qpgraph/qpGraph_Posth.pdf b/contents/07_qpgraph/qpGraph_Posth.pdf
diff --git a/contents/08_msmc/msmc.rst b/contents/08_msmc/msmc.rst
@@ -156,6 +156,10 @@ The ``-s`` flag tells MSMC to skip sites with ambiguous phasing. As a rule of th
 Plotting in Python
 ------------------
 
+For plotting in python, we first need to import the `pandas <https://pandas.pydata.org>`__ library via::
+
+    import pandas as pd
+
 The result files from MSMC2 look like this::
 
     time_index	left_time_boundary	right_time_boundary	lambda