#minor bump and updates to the NEWS

DESCRIPTION

@@ -1,8 +1,8 @@
 Package: manynet
-Title: Many Ways to Make, Manipulate, and Map Myriad Networks
-Version: 0.2.11
-Date: 2023-12-14
-Description: A set of tools for making, manipulating, and mapping many different types of networks.
+Title: Many Ways to Make, Modify, and Map Myriad Networks
+Version: 0.3.0
+Date: 2023-12-15
+Description: A set of tools for making, modifying, and mapping many different types of networks.
    All functions operate with matrices, edge lists, and 'igraph', 'network', and 'tidygraph' objects,
    and on one-mode, two-mode (bipartite), and sometimes three-mode networks.
    The package includes functions for importing and exporting, creating and generating networks,
@@ -24,26 +24,27 @@ Imports:
     network,
     tidygraph
 Suggests: 
+    BiocManager,
+    concaveman,
     gganimate,
+    ggforce,
+    gifski,
+    graphlayouts,
+    grDevices,
+    knitr,
+    learnr,
     methods,
+    migraph,
+    minMSE,
+    multiplex,
+    patchwork,
+    png,
     readxl,
+    rmarkdown,
     roxygen2,
     RSiena,
     testthat,
-    xml2,
-    patchwork,
-    rmarkdown,
-    learnr,
-    BiocManager,
-    minMSE,
-    graphlayouts,
-    ggforce,
-    multiplex,
-    concaveman,
-    migraph,
-    knitr,
-    gifski,
-    png
+    xml2
 Enhances:
     Rgraphviz
 Authors@R: 

NEWS.md

@@ -1,29 +1,41 @@
-# manynet 0.2.11
+# manynet 0.3.0
 
-2023-12-14
+2023-12-15
 
 ## Package
 
-* Added `scale_` family of functions to website.
+* Overhaul of the README to summarise many of the unique aspects of the package
 
 ## Making
 
-* Added `as_tidygraph()` method for diff_model objects.
+* Added `as_tidygraph()` method for diff_model objects
+* Added `as_siena()` method for tidygraph objects
 
-## Manipulating
+## Modifying
 
-* `to_waves()` now works on diff_model objects, add attributes and names.
+* Manipulating functions now called Modifying
+* `to_waves()` now works on diff_model objects, add attributes and names
+* `is_multiplex()` now recognises a tie/edge 'type' attribute as evidence of multiplexity
+* Deleted unnecessary reexports from other packages
+  - `igraph::is_bipartite()` is superseded by `is_twomode()`
+  - `tidygraph::activate()` is superseded by `mutate_ties()` and similar functions
+* Fixed bug by replacing older `igraph::as_incidence_matrix()` and `igraph::graph_from_incidence_matrix()`
+with `igraph::as_biadjacency_matrix()` and `igraph::graph_from_biadjacency_matrix()`
 
 ## Mapping
 
-* Added functionality for plotting diff_model objects with better layouts using `autographr()`, `autographs()`, and `autographd()`.
-* Added more custom themes (ETHZ, UZH, and RUG palettes) for plots.
-* Added more custom `scale_` functions (ETHZ, UZH, and RUG palettes) for changing colour scales in plots.
-* Fixed bug with specifying `node_size` in `autographd()`.
+* `autographr()` now plots diff_model objects, showing the diffusion as a heatmap on the vertices
+* `autographs()` and `autographd()` now utilise network information in diff_model objects to provide better layouts 
+* Fixed bug with specifying `node_size` in `autographd()`
+* `many_palettes` replaces `iheid_palette`
+* Added new palettes, themes and scales for graphs
+  - `theme_ethz()`, `scale_color_ethz()`/`scale_colour_ethz()`, and `scale_fill_ethz()` for ETH Zürich
+  - `theme_uzh()`, `scale_color_uzh()`/`scale_colour_uzh()`, and `scale_fill_uzh()` for Uni Zürich
+  - `theme_rug()`, `scale_color_rug()`/`scale_colour_rug()`, and `scale_fill_rug()` for Uni Gröningen
 
 ## Data
 
-* Added first version of `ison_physicians` data.
+* Added `ison_physicians` data that includes four, multiplex networks with adoption data
 
 # manynet 0.2.10
 

cran-comments.md

@@ -8,5 +8,3 @@
 ## R CMD check results
 
 0 errors | 0 warnings | 0 notes
-
-- Fixed documentation issues from previous submission