Analysis Tookit Catalog
| Name | Description | Language | URL |
|---|---|---|---|
| HBonanza | Hydrogen bond analysis tool | Python | http://nbcr.ucsd.edu/data/sw/hosted/hbonanza/ |
| MDTraj | MD trajectory manipulation | Python | http://mdtraj.org/latest/ |
| NetworkX | Create & manipulate complex networks | Python | https://networkx.github.io/index.html |
| PyGBe | Implicit solvent electrostatics calculation | Python | https://github.com/barbagroup/pygbe |
| MMTK | Mostly a MD package, but has some analysis tools | Python | http://dirac.cnrs-orleans.fr/MMTK/ |