add command to convert txt to tsv

sophie22 · Jun 9, 2023 · f643915 · f643915
1 parent a68d494
commit f643915
Showing 1 changed file with 0 additions and 3 deletions.
diff --git a/genes_coverage.py b/genes_coverage.py
@@ -49,9 +49,6 @@ def main():
     # sambamba output file (txt)
     sambamba_txt = sys.argv[1]
     sambamba_filename = Path(sambamba_txt).stem
-    sambamba_tsv = sambamba_filename + ".tsv"
-    command = f"sed -e 's/ /\t/g' {sambamba_txt} > {sambamba_tsv}"
-    process = subprocess.call(command, shell=True)
 
     # Parse sample and panel name from the input filename
     sample_name = sambamba_filename.split("_")[0]