add context to output file

sophie22 · May 7, 2022 · 33dbfce · 33dbfce
1 parent aee5b39
commit 33dbfce
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diff --git a/genes_coverage.py b/genes_coverage.py
@@ -2,7 +2,6 @@
 
 # Import libraries/packages for use in the code
 import sys
-from numpy import outer
 import pandas as pd # v1.3.4
 
 ### Read inputs from  the command line
@@ -30,5 +29,6 @@
 ### Write gene symbols with suboptimal coverage to file
 outfile = f"genes_suboptimal_coverage{coverage_threshold}x.txt"
 with open(outfile, 'w') as fh:
+    fh.write(f"The following genes had regions not fully covered at 30x: \n")
     for gene in below_threshold_genes:
         fh.write(gene + "\n")
diff --git a/genes_suboptimal_coverage30x.txt b/genes_suboptimal_coverage30x.txt
@@ -1,3 +1,4 @@
+The following genes had regions not fully covered at 30x: 
 SELENON
 MSTO1
 NEB