pseudo code

sophie22 · May 7, 2022 · 14960e3 · 14960e3
1 parent 8aa983c
commit 14960e3
Showing 1 changed file with 19 additions and 0 deletions.
diff --git a/genes_coverage.py b/genes_coverage.py
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+# Python 3.8
+
+# Import libraries/packages for use in the code
+import sys
+import pandas as pd # v1.3.4
+
+### Read inputs from  the command line
+# sambamba output file (tsv)
+
+# coverage threshold (default to 30)
+
+
+### Load sambamba output file contents into a DataFrame
+
+### Identify exons with less than 100% coverage at 30x
+
+### Identify unique genes with at least one exon with suboptimal coverage
+
+### Write gene symbols with suboptimal coverage to file