Ivy: software package for detection of RNA editing sites based on high-throughput sequencing data.

Ivy is currently under development...

Ivy includes 2 command line tools:

• ivy is detection tool for RNA editing events.
• edit_bench is benchmarking tool to test the detection accuracy.

System requirements

• Python 2.7+ (v2.7.5 recomended)
• Unix like operating system (tested by OS X 10.9 and RedHat)

Dependencies

The required dependencies to install the Ivy is pysam, pyVCF, fisher, and matplotlib.

Installation

pip install numpy
pip install matplotlib
python setup.py install

Documentation

• Ivy v0.0.1: documentation and manual

Licence

Ivy is available under the GPLv2 license. See the LICENSE file for more information.