[LinearSystem] Speedup computation of Jacobian matrices #4317
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
alxbilger
added
pr: enhancement
Contributor
Author
|
[ci-build][with-all-tests] |
alxbilger
force-pushed
the
speedupjacobians
branch
from
9064a11 to
a0a4823
Compare
hugtalbot
approved these changes
Nov 29, 2023
bakpaul
approved these changes
Nov 29, 2023
bakpaul
added
pr: status ready
bakpaul
pushed a commit
to bakpaul/sofa
that referenced
this pull request
Nov 29, 2023
…rk#4317) * [LinearSystem] Speedup computation of Jacobian matrices in case both mstates are the same * minor reformat to align calls to computeJacobiansFrom
hugtalbot
added a commit
that referenced
this pull request
Dec 20, 2023
* Added projective and lagrangian suffix * Reported changes to Cuda plugin * Modify rest of the code to avoid warning from compatibility layer * Add compatibility layer for deprecated header in CUDA * add alias for compatibility layer in scene construction * Report name modification to all scenes * Revert Compat modification... * [LinearAlgera, Core] Fix linking with LTO on MacOS/Clang (#4293) Fix linking with LTO on macos * [LinearSolver] Remove CSparse-based linear solvers (#4258) * [LinearSolver.Direct] Remove CSparse based solvers * Remove csparse extlib * Fetchable CSparseSolvers plugin * Remove references of SparseLUSolver * Remove references to SparseCholeskySolver * Remove csparse * Try to fix on Linux * Update the compat * [LinearSolver.Direct] Remove CSparse based solvers * Fix direct solver * [GUI.Qt] Minor single-line cleaning (#4308) Co-authored-by: erik pernod <erik.pernod@gmail.com> * [Sofa.GUI.Qt] Add cmake module for QGLViewer (#4290) * Add cmake module for QGLViewer * Support library name for apt packages * Fix qglviewer cmake finder module to first seach for a config cmake file. * Update cmake/Modules/FindQGLViewer.cmake Co-authored-by: Hugo <hugo.talbot@sofa-framework.org> --------- Co-authored-by: Frederick Roy <fredroy@users.noreply.github.com> Co-authored-by: Hugo <hugo.talbot@sofa-framework.org> * [MultiThreading] Avoid Static Initialization Order Fiasco (#4307) * [Core] Minor clean of DefaultAnimationLoop (#4314) * Remove unlogical use of visitor * Delete unused methods * [LinearSystem] Speedup computation of Jacobian matrices (#4317) * [LinearSystem] Speedup computation of Jacobian matrices in case both mstates are the same * minor reformat to align calls to computeJacobiansFrom * [SofaCUDA] FIX compilation SofaCUDA along with SparseGrid with Cuda12 (#4319) * FIX compilation SofaCUDA along with SparseGrid with Cuda12 * Use a multiplication instead * [Common] Add message to make the fetch mechanism less hidden (#4310) * Add message to make it more clear * slight modifications to be even more clear and add an error the dependency cannot be met * [Collections] Remove reference to non-existing SofaSimulation (#4320) remove ref to non-existent sofasimu Co-authored-by: Paul Baksic <30337881+bakpaul@users.noreply.github.com> * Remove repeating preffix from projective constraints * Moved alias to original header * Changed deprecation date * add component change entry * Change name following discussion with Hugo * Change remaining scene with FixedConstraint * remove last occurences in py files * Changed the message display of sceneCheckUsingAlias when aliased component is in component change * Fix factory * Add alias creation when object in componentRenamed in factory * Remove precedently added aliases --------- Co-authored-by: Frederick Roy <fredroy@users.noreply.github.com> Co-authored-by: Alex Bilger <alxbilger@users.noreply.github.com> Co-authored-by: erik pernod <erik.pernod@gmail.com> Co-authored-by: Olivier Roussel <olivier.roussel@inria.fr> Co-authored-by: Hugo <hugo.talbot@sofa-framework.org>
fredroy
added a commit
to fredroy/sofa
that referenced
this pull request
Dec 21, 2023
) * Added projective and lagrangian suffix * Reported changes to Cuda plugin * Modify rest of the code to avoid warning from compatibility layer * Add compatibility layer for deprecated header in CUDA * add alias for compatibility layer in scene construction * Report name modification to all scenes * Revert Compat modification... * [LinearAlgera, Core] Fix linking with LTO on MacOS/Clang (sofa-framework#4293) Fix linking with LTO on macos * [LinearSolver] Remove CSparse-based linear solvers (sofa-framework#4258) * [LinearSolver.Direct] Remove CSparse based solvers * Remove csparse extlib * Fetchable CSparseSolvers plugin * Remove references of SparseLUSolver * Remove references to SparseCholeskySolver * Remove csparse * Try to fix on Linux * Update the compat * [LinearSolver.Direct] Remove CSparse based solvers * Fix direct solver * [GUI.Qt] Minor single-line cleaning (sofa-framework#4308) Co-authored-by: erik pernod <erik.pernod@gmail.com> * [Sofa.GUI.Qt] Add cmake module for QGLViewer (sofa-framework#4290) * Add cmake module for QGLViewer * Support library name for apt packages * Fix qglviewer cmake finder module to first seach for a config cmake file. * Update cmake/Modules/FindQGLViewer.cmake Co-authored-by: Hugo <hugo.talbot@sofa-framework.org> --------- Co-authored-by: Frederick Roy <fredroy@users.noreply.github.com> Co-authored-by: Hugo <hugo.talbot@sofa-framework.org> * [MultiThreading] Avoid Static Initialization Order Fiasco (sofa-framework#4307) * [Core] Minor clean of DefaultAnimationLoop (sofa-framework#4314) * Remove unlogical use of visitor * Delete unused methods * [LinearSystem] Speedup computation of Jacobian matrices (sofa-framework#4317) * [LinearSystem] Speedup computation of Jacobian matrices in case both mstates are the same * minor reformat to align calls to computeJacobiansFrom * [SofaCUDA] FIX compilation SofaCUDA along with SparseGrid with Cuda12 (sofa-framework#4319) * FIX compilation SofaCUDA along with SparseGrid with Cuda12 * Use a multiplication instead * [Common] Add message to make the fetch mechanism less hidden (sofa-framework#4310) * Add message to make it more clear * slight modifications to be even more clear and add an error the dependency cannot be met * [Collections] Remove reference to non-existing SofaSimulation (sofa-framework#4320) remove ref to non-existent sofasimu Co-authored-by: Paul Baksic <30337881+bakpaul@users.noreply.github.com> * Remove repeating preffix from projective constraints * Moved alias to original header * Changed deprecation date * add component change entry * Change name following discussion with Hugo * Change remaining scene with FixedConstraint * remove last occurences in py files * Changed the message display of sceneCheckUsingAlias when aliased component is in component change * Fix factory * Add alias creation when object in componentRenamed in factory * Remove precedently added aliases --------- Co-authored-by: Frederick Roy <fredroy@users.noreply.github.com> Co-authored-by: Alex Bilger <alxbilger@users.noreply.github.com> Co-authored-by: erik pernod <erik.pernod@gmail.com> Co-authored-by: Olivier Roussel <olivier.roussel@inria.fr> Co-authored-by: Hugo <hugo.talbot@sofa-framework.org>
hugtalbot
added a commit
to hugtalbot/sofa
that referenced
this pull request
Jan 16, 2024
) * Added projective and lagrangian suffix * Reported changes to Cuda plugin * Modify rest of the code to avoid warning from compatibility layer * Add compatibility layer for deprecated header in CUDA * add alias for compatibility layer in scene construction * Report name modification to all scenes * Revert Compat modification... * [LinearAlgera, Core] Fix linking with LTO on MacOS/Clang (sofa-framework#4293) Fix linking with LTO on macos * [LinearSolver] Remove CSparse-based linear solvers (sofa-framework#4258) * [LinearSolver.Direct] Remove CSparse based solvers * Remove csparse extlib * Fetchable CSparseSolvers plugin * Remove references of SparseLUSolver * Remove references to SparseCholeskySolver * Remove csparse * Try to fix on Linux * Update the compat * [LinearSolver.Direct] Remove CSparse based solvers * Fix direct solver * [GUI.Qt] Minor single-line cleaning (sofa-framework#4308) Co-authored-by: erik pernod <erik.pernod@gmail.com> * [Sofa.GUI.Qt] Add cmake module for QGLViewer (sofa-framework#4290) * Add cmake module for QGLViewer * Support library name for apt packages * Fix qglviewer cmake finder module to first seach for a config cmake file. * Update cmake/Modules/FindQGLViewer.cmake Co-authored-by: Hugo <hugo.talbot@sofa-framework.org> --------- Co-authored-by: Frederick Roy <fredroy@users.noreply.github.com> Co-authored-by: Hugo <hugo.talbot@sofa-framework.org> * [MultiThreading] Avoid Static Initialization Order Fiasco (sofa-framework#4307) * [Core] Minor clean of DefaultAnimationLoop (sofa-framework#4314) * Remove unlogical use of visitor * Delete unused methods * [LinearSystem] Speedup computation of Jacobian matrices (sofa-framework#4317) * [LinearSystem] Speedup computation of Jacobian matrices in case both mstates are the same * minor reformat to align calls to computeJacobiansFrom * [SofaCUDA] FIX compilation SofaCUDA along with SparseGrid with Cuda12 (sofa-framework#4319) * FIX compilation SofaCUDA along with SparseGrid with Cuda12 * Use a multiplication instead * [Common] Add message to make the fetch mechanism less hidden (sofa-framework#4310) * Add message to make it more clear * slight modifications to be even more clear and add an error the dependency cannot be met * [Collections] Remove reference to non-existing SofaSimulation (sofa-framework#4320) remove ref to non-existent sofasimu Co-authored-by: Paul Baksic <30337881+bakpaul@users.noreply.github.com> * Remove repeating preffix from projective constraints * Moved alias to original header * Changed deprecation date * add component change entry * Change name following discussion with Hugo * Change remaining scene with FixedConstraint * remove last occurences in py files * Changed the message display of sceneCheckUsingAlias when aliased component is in component change * Fix factory * Add alias creation when object in componentRenamed in factory * Remove precedently added aliases --------- Co-authored-by: Frederick Roy <fredroy@users.noreply.github.com> Co-authored-by: Alex Bilger <alxbilger@users.noreply.github.com> Co-authored-by: erik pernod <erik.pernod@gmail.com> Co-authored-by: Olivier Roussel <olivier.roussel@inria.fr> Co-authored-by: Hugo <hugo.talbot@sofa-framework.org>
bakpaul
added a commit
to bakpaul/sofa
that referenced
this pull request
Feb 23, 2024
) * Added projective and lagrangian suffix * Reported changes to Cuda plugin * Modify rest of the code to avoid warning from compatibility layer * Add compatibility layer for deprecated header in CUDA * add alias for compatibility layer in scene construction * Report name modification to all scenes * Revert Compat modification... * [LinearAlgera, Core] Fix linking with LTO on MacOS/Clang (sofa-framework#4293) Fix linking with LTO on macos * [LinearSolver] Remove CSparse-based linear solvers (sofa-framework#4258) * [LinearSolver.Direct] Remove CSparse based solvers * Remove csparse extlib * Fetchable CSparseSolvers plugin * Remove references of SparseLUSolver * Remove references to SparseCholeskySolver * Remove csparse * Try to fix on Linux * Update the compat * [LinearSolver.Direct] Remove CSparse based solvers * Fix direct solver * [GUI.Qt] Minor single-line cleaning (sofa-framework#4308) Co-authored-by: erik pernod <erik.pernod@gmail.com> * [Sofa.GUI.Qt] Add cmake module for QGLViewer (sofa-framework#4290) * Add cmake module for QGLViewer * Support library name for apt packages * Fix qglviewer cmake finder module to first seach for a config cmake file. * Update cmake/Modules/FindQGLViewer.cmake Co-authored-by: Hugo <hugo.talbot@sofa-framework.org> --------- Co-authored-by: Frederick Roy <fredroy@users.noreply.github.com> Co-authored-by: Hugo <hugo.talbot@sofa-framework.org> * [MultiThreading] Avoid Static Initialization Order Fiasco (sofa-framework#4307) * [Core] Minor clean of DefaultAnimationLoop (sofa-framework#4314) * Remove unlogical use of visitor * Delete unused methods * [LinearSystem] Speedup computation of Jacobian matrices (sofa-framework#4317) * [LinearSystem] Speedup computation of Jacobian matrices in case both mstates are the same * minor reformat to align calls to computeJacobiansFrom * [SofaCUDA] FIX compilation SofaCUDA along with SparseGrid with Cuda12 (sofa-framework#4319) * FIX compilation SofaCUDA along with SparseGrid with Cuda12 * Use a multiplication instead * [Common] Add message to make the fetch mechanism less hidden (sofa-framework#4310) * Add message to make it more clear * slight modifications to be even more clear and add an error the dependency cannot be met * [Collections] Remove reference to non-existing SofaSimulation (sofa-framework#4320) remove ref to non-existent sofasimu Co-authored-by: Paul Baksic <30337881+bakpaul@users.noreply.github.com> * Remove repeating preffix from projective constraints * Moved alias to original header * Changed deprecation date * add component change entry * Change name following discussion with Hugo * Change remaining scene with FixedConstraint * remove last occurences in py files * Changed the message display of sceneCheckUsingAlias when aliased component is in component change * Fix factory * Add alias creation when object in componentRenamed in factory * Remove precedently added aliases --------- Co-authored-by: Frederick Roy <fredroy@users.noreply.github.com> Co-authored-by: Alex Bilger <alxbilger@users.noreply.github.com> Co-authored-by: erik pernod <erik.pernod@gmail.com> Co-authored-by: Olivier Roussel <olivier.roussel@inria.fr> Co-authored-by: Hugo <hugo.talbot@sofa-framework.org>
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
3 participants
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
in case both mstates are the same
By submitting this pull request, I acknowledge that
I have read, understand, and agree SOFA Developer Certificate of Origin (DCO).
Reviewers will merge this pull-request only if