run_netmhcpan_script added #1
Open
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
…ectly onto the disk in a csv file
…ectly onto the disk in a csv file
…ectly onto the disk in a csv file
…e dataset handling
…e training configuration
…utoEncoder, enhance training metrics and codebook usage tracking
…g configuration, and add UMAP visualization for quantized latent space
…ove codebook initialization, and adjust training parameters
Improved the SCQ layer with added support for resetting unused codebook vectors, better error handling, and parameter clarity. Updated training script with changes to batch size handling, latent space extraction, and added detailed visualization methods for cluster and codebook distributions. The changes improve model functionality, usability, and performance monitoring.
- Introduced BinaryMLP, TabularTransformer, and EmbeddingCNN models for diverse classification tasks. - Modified run_pMHC_DL.py to support new model types and attention-based features. - Added functionality to process and save quantized outputs with detailed logging.
…, streamline binding label addition, and enhance dataset preparation for NetMHCpan
…sampling augmentation
…d attention visualization
… allele normalization
…apping and optional display
…ltering and noise augmentation
… with ESM embeddings
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
No description provided.