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Reclassify taxonomy
- #1093
#1093
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rosekim2001-dev
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Reclassify taxonomy
#1093
rosekim2001-dev
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Commits on Mar 24, 2026
Initial EM reclassify integration
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Commits on Mar 25, 2026
Add reclassify flat-file and taxonomy outputs
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Update taxonomy reclassification scoring
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Commits on Mar 26, 2026
Rename reclassify CLI parameters
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Commits on Mar 27, 2026
Update reclassify taxonomy target filtering
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Refine reclassify abundance filtering
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Commits on Apr 6, 2026
0406 updated EM algorithm
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Commits on Apr 29, 2026
Refine EM reclassify drop cutoff and sync equations doc
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Delete NEW0423_reclassify.md
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Commits on May 14, 2026
EM_0514 update
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Remove markdown docs from EM_0514 update
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Commits on May 26, 2026
reclassify final output change- add target's abundance
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Commits on Jul 6, 2026
Move target dropping to abundance and add breadth of coverage
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Update EM defaults and reclassify/abundance help text
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Commits on Jul 9, 2026
Fix corrupt backtrace in reclassify and make abundance coverage robust
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Commits on Jul 21, 2026
Use posterior-weighted coverage in abundance and drop --gamma
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remove the cov in posterior calculation
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Commits on Aug 5, 2026
fix coverage math in EM reclassify/abundance & make separate coverage kernel & squarem correction
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