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  • Oxford Nanopore Technologies
  • Oxford, UK
  • X @sergeynurk

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Achievement: StarstruckAchievement: Arctic Code Vault ContributorAchievement: Pull Shark

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  • perbase Public

    Forked from nkkarpov/perbase

    Per-base per-nucleotide depth analysis

    Rust MIT License Updated Nov 29, 2024

  • canu Public

    Forked from marbl/canu

    A single molecule sequence assembler for genomes large and small.

    C++ Updated Oct 4, 2023

  • sg_sandbox Public

    Experimental String Graph construction and processing

    Python 25 1 Other Updated Aug 14, 2023

  • GFAse Public

    Forked from rlorigro/GFAse

    Tool for globally phasing diploid assembly graphs with orthogonal data

    C++ Mozilla Public License 2.0 Updated May 3, 2023

  • GFA-spec Public

    Forked from GFA-spec/GFA-spec

    Graphical Fragment Assembly (GFA) Format Specification

    Makefile Updated Jun 16, 2022

  • Bandage Public

    Forked from rrwick/Bandage

    a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

    C++ GNU General Public License v3.0 Updated Feb 15, 2022

  • gfacpp Public

    C++ Other Updated Oct 25, 2021

  • quast Public

    Forked from ablab/quast

    Genome assembly evaluation tool

    AMPL Other Updated Oct 8, 2021

  • tangle-resolution Public

    Forked from maickrau/tangle-resolution
    Python Updated Jul 15, 2021

  • GraphAligner Public

    Forked from maickrau/GraphAligner
    C++ MIT License Updated Feb 18, 2021

  • bacValidation Public

    Forked from skoren/bacValidation

    BAC-based validation of assemblies

    C Other Updated May 21, 2020

  • spades Public

    Forked from ablab/spades

    SPAdes Genome Assembler

    C++ Updated Feb 3, 2020

  • miniasm Public

    Forked from lh3/miniasm

    Ultrafast de novo assembly for long noisy reads (though having no consensus step)

    TeX MIT License Updated Jan 24, 2020

  • MashMap Public

    Forked from marbl/MashMap

    A fast approximate aligner for long DNA sequences

    C++ Other Updated Sep 20, 2018

  • meta-strains Public

    Jupyter Notebook MIT License Updated Jul 15, 2018