fix: various adaptations to changes in Snakemake 8.0

Author: johanneskoester

snakemake_interface_executor_plugins/executors/real.py

@@ -87,9 +87,6 @@ def additional_general_args(self):
         """
         return []
 
-    def get_workdir_arg(self):
-        return self.workflow_property_to_arg("overwrite_workdir", flag="--directory")
-
     def get_job_args(self, job: ExecutorJobInterface, **kwargs):
         return join_cli_args(
             [
@@ -163,7 +160,6 @@ def format_job_exec(self, job: ExecutorJobInterface):
                 "-m snakemake",
                 format_cli_arg("--snakefile", self.get_snakefile()),
                 self.get_job_args(job),
-                self.get_workdir_arg(),
                 general_args,
                 self.additional_general_args(),
                 format_cli_arg("--mode", self.get_exec_mode()),

snakemake_interface_executor_plugins/executors/remote.py

@@ -101,17 +101,6 @@ def cores(self):
     def get_exec_mode(self) -> ExecMode:
         return ExecMode.REMOTE
 
-    def get_default_remote_provider_args(self):
-        if not self.disable_default_remote_provider_args:
-            return super().get_default_remote_provider_args()
-        else:
-            return ""
-
-    def get_workdir_arg(self):
-        if self.workflow.storage_settings.assume_shared_fs:
-            return super().get_workdir_arg()
-        return ""
-
     def get_python_executable(self):
         return (
             sys.executable

snakemake_interface_executor_plugins/settings.py

@@ -6,6 +6,11 @@
 
 
 class RemoteExecutionSettingsExecutorInterface(ABC):
+    @property
+    @abstractmethod
+    def jobname(self) -> str:
+        ...
+
     @property
     @abstractmethod
     def jobscript(self) -> str: