fix: for some rules, omit software env when caching (#63)

snakemake-workflows · Nov 4, 2022 · 1d2e3a9 · 1d2e3a9
1 parent a85b268
commit 1d2e3a9
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/workflow/Snakefile b/workflow/Snakefile
@@ -1,6 +1,6 @@
 from snakemake.utils import min_version
 
-min_version("6.3.0")
+min_version("7.17.0")
 
 
 configfile: "config/config.yaml"

diff --git a/workflow/rules/ref.smk b/workflow/rules/ref.smk
@@ -11,7 +11,7 @@ rule get_transcriptome:
         release=config["resources"]["ref"]["release"],
     wildcard_constraints:
         type="cdna|cds|ncrna",
-    cache: True
+    cache: "omit-software"
     wrapper:
         "0.74.0/bio/reference/ensembl-sequence"
 
@@ -26,7 +26,7 @@ rule get_annotation:
         fmt="gtf",
     log:
         "logs/get-annotation.log",
-    cache: True
+    cache: "omit-software"
     wrapper:
         "0.80.1/bio/reference/ensembl-annotation"
 
@@ -41,7 +41,7 @@ rule get_transcript_info:
         "logs/get_transcript_info.log",
     conda:
         "../envs/biomart.yaml"
-    cache: True
+    cache: "omit-software"
     script:
         "../scripts/get-transcript-info.R"