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new sub-aligners within PASTA #28

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merged 10 commits into from
Apr 6, 2018
Merged

new sub-aligners within PASTA #28

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3d39797
new
Aug 15, 2017
8005196
fix setup.py
Aug 15, 2017
8373662
fix setup.py
Aug 15, 2017
457e280
ginsi
Aug 15, 2017
484532f
fix ginsi
Aug 15, 2017
e5de5fe
hopefully fixed
Aug 15, 2017
90bc689
message
Aug 15, 2017
89eb714
Update README.md
Aug 15, 2017
b80eb19
Update README.md
koditaraszka Apr 5, 2018
e0ef70d
Update README.md
koditaraszka Apr 5, 2018
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hopefully fixed
  • Loading branch information
Kodi committed Aug 15, 2017
commit e5de5fef19417d33ff8afdf79a98069b574c7d9a
2 changes: 2 additions & 0 deletions setup.py
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Original file line number Diff line number Diff line change
Expand Up @@ -187,6 +187,7 @@ def create_symlink(src_path, subdir=None):
for subdir in tools_bin_subdirs:
if subdir:
tdir = os.path.join(tools_bin_srcdir, subdir)
#print 'tdir' + str(tdir)
else:
tdir = tools_bin_srcdir
for fpath in os.listdir(tdir):
Expand All @@ -201,6 +202,7 @@ def create_symlink(src_path, subdir=None):
tar = tarfile.open(fullPath, "r:gz")
tar.extractall(searchDir)
tar.close()

ginsiDir = os.path.join(tools_bin_srcdir, 'mafft')
create_symlink(ginsiDir, "ginsi")
setup(**param)