This is a repo by Msc Bioinformatics Student where I place all C++ codes, machine learning(R codes) and Python

 +---------------+
 |   Fastq Files  |
 +---------------+
         |
         v
 +---------------+
 |  Trimming &   |
 |  Quality      |
 |  Control      |
 +---------------+
         |
         v
 +---------------+
 |    Alignment  |
 +---------------+
         |
         v
 +---------------+
 |   SAM/BAM     |
 |   Conversion  |
 +---------------+
         |
         v
 +---------------+
 |     Sorting   |
 +---------------+
         |
         v
 +---------------+
 |    Mark Dups   |
 +---------------+
         |
         v
 +---------------+
 |    Indexing   |
 +---------------+
         |
         v
 +---------------+
 |     BAM File   |
 +---------------+