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Add UMLS
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simonepri committed Mar 20, 2020
1 parent 9a6a90f commit e5c601c
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Showing 18 changed files with 26,993 additions and 0 deletions.
6,529 changes: 6,529 additions & 0 deletions UMLS/edges_as_id_all.tsv

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661 changes: 661 additions & 0 deletions UMLS/edges_as_id_test.tsv

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5,216 changes: 5,216 additions & 0 deletions UMLS/edges_as_id_train.tsv

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652 changes: 652 additions & 0 deletions UMLS/edges_as_id_valid.tsv

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6,529 changes: 6,529 additions & 0 deletions UMLS/edges_as_text_all.tsv

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661 changes: 661 additions & 0 deletions UMLS/edges_as_text_test.tsv

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5,216 changes: 5,216 additions & 0 deletions UMLS/edges_as_text_train.tsv

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652 changes: 652 additions & 0 deletions UMLS/edges_as_text_valid.tsv

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135 changes: 135 additions & 0 deletions UMLS/frequency_entities_all.tsv
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disease_or_syndrome 382
neoplastic_process 380
mental_or_behavioral_dysfunction 380
pathologic_function 378
experimental_model_of_disease 375
cell_or_molecular_dysfunction 374
mental_process 294
organism_function 271
physiologic_function 268
organ_or_tissue_function 267
genetic_function 266
molecular_function 265
cell_function 264
acquired_abnormality 227
biologic_function 225
anatomical_abnormality 224
congenital_abnormality 223
injury_or_poisoning 192
diagnostic_procedure 183
laboratory_procedure 182
occupation_or_discipline 151
biomedical_occupation_or_discipline 151
natural_phenomenon_or_process 148
immunologic_factor 135
biologically_active_substance 131
vitamin 126
receptor 126
neuroreactive_substance_or_biogenic_amine 126
hormone 126
enzyme 126
pharmacologic_substance 124
antibiotic 124
therapeutic_or_preventive_procedure 108
laboratory_or_test_result 106
entity 101
tissue 98
hazardous_or_poisonous_substance 98
body_part_organ_or_organ_component 98
virus 95
cell_component 92
rickettsia_or_chlamydia 88
gene_or_genome 88
chemical 88
cell 88
bacterium 88
fungus 87
organism_attribute 85
clinical_attribute 85
molecular_biology_research_technique 82
research_activity 80
organism 80
organic_chemical 80
fully_formed_anatomical_structure 80
chemical_viewed_functionally 77
lipid 76
animal 76
vertebrate 75
steroid 75
nucleic_acid_nucleoside_or_nucleotide 75
invertebrate 75
eicosanoid 75
chemical_viewed_structurally 75
amino_acid_peptide_or_protein 75
organophosphorus_compound 74
carbohydrate 74
professional_or_occupational_group 72
plant 71
mammal 71
human 71
alga 71
reptile 70
individual_behavior 70
fish 70
bird 70
amphibian 70
population_group 69
body_substance 67
sign_or_symptom 66
inorganic_chemical 66
indicator_reagent_or_diagnostic_aid 66
element_ion_or_isotope 66
biomedical_or_dental_material 66
phenomenon_or_process 65
archaeon 65
physical_object 64
patient_or_disabled_group 64
group 63
family_group 61
age_group 61
behavior 60
social_behavior 59
health_care_activity 59
embryonic_structure 58
clinical_drug 58
finding 52
body_space_or_junction 50
human_caused_phenomenon_or_process 49
environmental_effect_of_humans 49
drug_delivery_device 49
medical_device 48
substance 43
occupational_activity 39
conceptual_entity 39
event 36
body_location_or_region 35
anatomical_structure 35
manufactured_object 32
governmental_or_regulatory_activity 32
food 32
educational_activity 32
research_device 31
regulation_or_law 31
organization 30
self_help_or_relief_organization 29
health_care_related_organization 29
professional_society 28
quantitative_concept 26
activity 24
intellectual_product 23
temporal_concept 22
qualitative_concept 21
geographic_area 21
daily_or_recreational_activity 21
classification 21
idea_or_concept 20
body_system 15
spatial_concept 14
machine_activity 14
group_attribute 13
nucleotide_sequence 11
molecular_sequence 11
amino_acid_sequence 11
carbohydrate_sequence 9
functional_concept 7
language 4
131 changes: 131 additions & 0 deletions UMLS/frequency_entities_test.tsv
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neoplastic_process 51
mental_or_behavioral_dysfunction 44
disease_or_syndrome 44
pathologic_function 40
cell_or_molecular_dysfunction 40
experimental_model_of_disease 37
organ_or_tissue_function 33
physiologic_function 32
genetic_function 29
biologic_function 29
organism_function 28
molecular_function 27
cell_function 26
mental_process 25
anatomical_abnormality 24
injury_or_poisoning 22
diagnostic_procedure 20
congenital_abnormality 19
antibiotic 19
biologically_active_substance 18
acquired_abnormality 18
vitamin 17
laboratory_procedure 17
receptor 16
hormone 16
pharmacologic_substance 15
fully_formed_anatomical_structure 15
virus 14
natural_phenomenon_or_process 14
bacterium 14
human_caused_phenomenon_or_process 13
biomedical_occupation_or_discipline 13
tissue 12
organism_attribute 12
organic_chemical 12
occupation_or_discipline 12
neuroreactive_substance_or_biogenic_amine 12
cell_component 12
fungus 11
laboratory_or_test_result 10
immunologic_factor 10
entity 10
cell 10
carbohydrate 10
bird 10
therapeutic_or_preventive_procedure 9
plant 9
molecular_biology_research_technique 9
enzyme 9
element_ion_or_isotope 9
chemical 9
alga 9
organism 8
mammal 8
human 8
chemical_viewed_functionally 8
amino_acid_peptide_or_protein 8
age_group 8
social_behavior 7
nucleic_acid_nucleoside_or_nucleotide 7
hazardous_or_poisonous_substance 7
embryonic_structure 7
chemical_viewed_structurally 7
body_part_organ_or_organ_component 7
archaeon 7
vertebrate 6
professional_or_occupational_group 6
population_group 6
organophosphorus_compound 6
lipid 6
individual_behavior 6
fish 6
family_group 6
environmental_effect_of_humans 6
eicosanoid 6
animal 6
rickettsia_or_chlamydia 5
reptile 5
phenomenon_or_process 5
occupational_activity 5
inorganic_chemical 5
daily_or_recreational_activity 5
clinical_drug 5
clinical_attribute 5
biomedical_or_dental_material 5
amphibian 5
substance 4
steroid 4
sign_or_symptom 4
research_device 4
patient_or_disabled_group 4
invertebrate 4
indicator_reagent_or_diagnostic_aid 4
group 4
educational_activity 4
drug_delivery_device 4
conceptual_entity 4
anatomical_structure 4
research_activity 3
physical_object 3
medical_device 3
manufactured_object 3
idea_or_concept 3
health_care_activity 3
gene_or_genome 3
event 3
body_space_or_junction 3
behavior 3
temporal_concept 2
regulation_or_law 2
quantitative_concept 2
qualitative_concept 2
organization 2
nucleotide_sequence 2
molecular_sequence 2
machine_activity 2
food 2
finding 2
body_substance 2
body_location_or_region 2
activity 2
self_help_or_relief_organization 1
professional_society 1
language 1
health_care_related_organization 1
group_attribute 1
governmental_or_regulatory_activity 1
geographic_area 1
classification 1
carbohydrate_sequence 1
body_system 1
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