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  • Implemented interface_atom_pairs to return interacting atom pairs within a specified cutoff.
    • Atoms are annotated with their interacting partners via the interacting_atoms attribute when assign_attribute=True.
  • Enhanced interface_residue_pairs to return interacting residue pairs within a specified cutoff.
    • Residues are annotated with their interacting partners via the interacting_residues attribute when assign_attribute=True.
  • Improved usability by making assigned attributes directly relevant to the function, enabling downstream analysis of interactions.
  • Updated both functions to ensure efficient use of the SpaceQuery KD-tree structure.

…ts to Interface class

- Implemented `interface_atom_pairs` to return interacting atom pairs within a specified cutoff.
  - Atoms are annotated with their interacting partners via the `interacting_atoms` attribute when `assign_attribute=True`.
- Enhanced `interface_residue_pairs` to return interacting residue pairs within a specified cutoff.
  - Residues are annotated with their interacting partners via the `interacting_residues` attribute when `assign_attribute=True`.
- Improved usability by making assigned attributes directly relevant to the function, enabling downstream analysis of interactions.
- Updated both functions to ensure efficient use of the `SpaceQuery` KD-tree structure.
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