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Use manual CSF mask and improve CSF/SC figure #69

Merged
merged 5 commits into from
Jan 20, 2024
Merged

Use manual CSF mask and improve CSF/SC figure #69

merged 5 commits into from
Jan 20, 2024

Commits on Jan 20, 2024

  1. Using manual T2starw SC segmentation if it exists 

    Fixes #56
    @jcohenadad
    jcohenadad committed Jan 20, 2024
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  2. Get CSF masks from the derivatives 

    Fixes #67
    @jcohenadad
    jcohenadad committed Jan 20, 2024
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  3. Fixed cropping and metric extraction for CSF

    @jcohenadad
    jcohenadad committed Jan 20, 2024
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  4. Display CSF/SC instead of SC/CSF 

    Clearer to show the better on top
    @jcohenadad
    jcohenadad committed Jan 20, 2024
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  5. Updated smoothing kernel to 40

    @jcohenadad
    jcohenadad committed Jan 20, 2024
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